Pseudomonas syringae pv. tomato DC3000, PSPTO_3656 (ligA)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3656
NCBI Old Locus Tag	PSPTO3656
Name	ligA Synonym: PSPTO3656
Replicon	chromosome
Genomic location	4118486 - 4120849 (- strand)

Cross-References

RefSeq	NP_793430.1
GI	28870811
Entrez	1185321
INSDC	AAO57125.1
NCBI Locus Tag	PSPTO_3656
NCBI Old Locus Tag	PSPTO3656
UniParc	UPI000000901F
UniProtKB Acc	Q87YY6
UniProtKB ID	DNLJ_PSESM
UniRef100	UniRef100_Q87YY6
UniRef50	UniRef50_Q9KTD1
UniRef90	UniRef90_Q48KR2

Product

Feature Type	CDS
Coding Frame	1
Product Name	NAD-dependent DNA ligase LigA
Synonyms
Evidence for Translation
Charge (pH 7)	-16.59
Kyte-Doolittle Hydrophobicity Value	-0.220
Molecular Weight (kDa)	86.3
Isoelectric Point (pI)	5.31

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 599 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003829 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3656 Search term: ligA Search term: NAD-dependent DNA ligase LigA

Human Homologs

References