Pseudomonas syringae pv. tomato DC3000, PSPTO_3656 (ligA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGCTGCAGAACATTCTGGAAAGCGGTCTGCGTTTTGGCGAGATGGACATTTTCCATCGTCACGAAAGCATGGCCGGCAACGGCGAAGTGCTGTTCTCG ATGGCCAATGCGGTCAAGCCCGGCGTATTCGATCTGGACGACATCGACCATTTCAGCACCCGCGCAGTGAGCTTCTTCCTTGGCTTGCCAGGCCCTCGTC GTCCCAAGCAGGCTTTTGATGTGATGGTTGCCGCTGCTCGCAAGCTGGCTCACGAGCTGGATGGCGAATTGAAAGATGACCAGCGCAGTGTCATGACCGC GCAGACCATCGAGCATTATCGCCAGCGTATCGTCGAGTTCGAGCGTCGTGCGCTAACCCAGCGTCGCGGGTAAGCGTCATTGCACCGGTCCCGTGCCAGG CGTGTGCTTGGGCATGCCTTGCGCGGAACCGGACTGAAAAAGAACAGAACCAACAGATGAGCAGCCTCGGCTGCTTTTTTGCTTTTTGAGAGAACACCGT
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| DNA Sequence for Gene |
>PSPTO_3656
|ligA
ATGAAGGCCGCCGAAACCCGAATCCTGGAACTGCGTGCAGAGCTGGATCAGCACAACTACCGCTATCACGTTCTGGACGAGCCGAGCATCCCGGATGCCG AATACGACCGCCTGTTCCACGAGCTCAAGGCCCTTGAGGCAGAAAACCCGCATCTGGTCACGCCCGATTCGCCGACCCAGCGGGTGGGCAGTGCCGCCTT GTCGGCTTTCACCCAGGTGCGTCACGAAATGGCCATGCTCAGCCTGGGCAACGCCTTTGAAGAAAACGACCTGCGCGAGTTCGACCGCCGTGTAACCGAA GGGCTGGACCTGCCTGCCGGGGATCTGTTTGGCGAAGGCGGCAAGGTGCAATACAGCTGCGAGCCCAAGCTGGACGGTCTGGCGGTCAGCCTGCTGTACC GCGACGGCGCACTGGTACGCGGTGCCACGCGCGGCGACGGGACCACGGGCGAAGACATCAGCGTCAATGTGCGCACCGTGCGCAATATCCCGCTCAAGCT GCAAGGCAAGGGCTGGCCAGAGCTGCTGGAAGTACGCGGCGAAGTGTTCATGTCCAAGGCCGGTTTCGAGCGGCTCAACGCCAGCCAGCTGGAAGTTGGC GGCAAGACCTTCGCCAACCCGCGCAACGCCGCTGCTGGCAGCCTGCGCCAGCTGGATTCGAAGATCACCGCCAACCGTCCGCTGGAATTCTGTTGTTATG GCCTGGGGCAGACCTCGGCAGAAATTGCCGACACGCACATCGGCGTGCTTGAAACGTTGAAAAAATGGGGTATGCCGGTCAGTCGCGAACTGAAACTGGC GGACGGCGTCGAGGAATGTCTGGCTTACTACCGCGACATCGGTGAGCGACGTCTTTCGCTGACCTACGAGATCGACGGTGTGGTGTTCAAGGTCAACAAC CTGGCGGCGCAGCGCGAACTGGGCTTTCGTGCCCGCGAGCCACGCTGGGCGATTGCCCACAAGTTTCCGGCCATGGAAGAGCTGACCGAACTGCTGGACG TTGAATTTCAGGTCGGCCGCACCGGCGCGGTCACGCCGGTCGCGCGCCTCAAGCCGGTCAAGGTTGCCGGTGTCATGGTCGCCAACGCCACGTTGCACAA CATGGATGAAGTGGCGCGGCTGGGGCTGATGATTGGCGACACGGTGATTATCCGTCGCGCCGGTGACGTGATTCCGCAGGTAGTGCAGGTCGTCGTCGAG CGCCGCCCCGAAACCGCCAAACCGGTCGAAGTCCCGCAAAGCTGCCCGGTGTGCGGCTCGCATGTCGAGCGCACGCAGTTGATCAAACGCAGCAAGGGCA AGGAAACCGTTACCGAAGGCGCGGTGTATCGCTGCGTCGGACGGCTGGCCTGTGGTGCGCAACTCAAGCAGGCGATCATTCACTATGTGTCGCGTCGGGC AATGGACATCGAAGGCCTGGGCGACAAGACCATCGAGCAACTGGTCGATGAAAAGCTCATTGGTTCGCCTGCCGACCTGTACAAACTGAAATACGAACAG ATCATCGACCTGGAGGGTTTTGCTGAAATCTCCAGCAACAAGCTGCTCAAGGCGATTGCCGACAGCCGACAGCCGACCCTGGCGCGCTTCATCTATGCCC TGGGTATTCCCGATGTAGGGGAGGAGACGGCCAAGGTACTGGCGCGCTCACTGGCGTCGTTGGACCGCGTCAAACAGGCACTGCCGGAGGTGCTGACGTA TCTGCCGGATGTCGGTCTGGAAGTCGCTTACGAAATTCACAGCTTCTTCGAGGATGAGCACAACCGCAACGTCATCGACGCGCTGCTGGGCGAGTGCGGT CTGCAATTGCAGGATCAGGGTGAGCTGGGTGCAGAGTTTGCCGCCAGCACCACGCTGGAAGGCCTGATCGACAAGCTGCACATTCCATCGGTAGGGCCGG GTGCTGCACAGAAACTGGCTGACCGGTTCGGCACGCTGGAGGCGGTCATCAGCGCTGACTGGCTGGACATGCGCCAGACGCTGCCGGAGAAACAGGCCAA ATCGGTCCGCGACTTCTTCGACGACAACGCCAACGCCGAACGCGCCCGCGCCATCGAAGCCCAGCTCAAGGACTTCGGCATGCATTGGCGCAGCGAGAAA AAAACCGTCGAAGGCTTGCCGCTGGCAGGCCAGACCTGGGTGCTGACCGGTTCGCTGGAACGCATGAGTCGCGACGTGGCCAAGGAAAAACTCGAAAGCC TGGGGGCCAAGGTGTCCGGCTCGGTATCGGCCAAGACCCACACCGTGGTCGCCGGGCCAGGTGCGGGTTCCAAACTGACCAAAGCCAATGAGCTGGGCCT GACCGTGCTGGACGAAGAGGCACTGCTCAAGCGCCTGACCGAACTGGGCGTAGCGGTTGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGGCCGGTGATGCATGCCTACGCACTTGTCCGCTGTGGAGGCGGACCGGGCGAAGCTCCGCTTGTCCGCGAACTGTCGTGAGCCGACAGTAAAACCG GTGCGCCCGGCACCTCAAAAGCCCTGTTTTGCGCGGTCATCAGGACTTGTGTGTAACGCTGAGCGCTGTAGCGTTGGAACGATAATCTCGACTATCGTGC GATGCACTGCGCGTAAGCATGCAGTTTCCGGCCTTTGATTATCGTGCCGACGCTCCGCGTCGGTGCGCCGTGCTGGACGCTCTGCGTCCGATCTTGCATG GGTAGTGCCAGACCCCACCGACGCACCGTTTTCGCCCACAAAAAACGCCGCCAACACTGTCCGTCTCCGCCGCTCGATAATATTTTGAACCCCTGCAGCG TCGGCATGATCTAGTCCATGCAAGGCCAACGGGAGATCGCCATGTATCGCTTTTTCGAGCAATTGAGTTCACGCATTACCGCCCCATTTGTCGGCGAATC
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTE GLDLPAGDLFGEGGKVQYSCEPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLEVRGEVFMSKAGFERLNASQLEVG GKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSAEIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFKVNN LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVVE RRPETAKPVEVPQSCPVCGSHVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQLVDEKLIGSPADLYKLKYEQ IIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVGEETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG LQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISADWLDMRQTLPEKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEK KTVEGLPLAGQTWVLTGSLERMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRLTELGVAVD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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