Pseudomonas syringae pv. tomato DC3000, PSPTO_1649

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1649
NCBI Old Locus Tag	PSPTO1649
Name	Synonym: PSPTO1649
Replicon	chromosome
Genomic location	1808975 - 1811980 (+ strand)

Cross-References

RefSeq	NP_791474.1
GI	28868855
Entrez	1183286
INSDC	AAO55169.1
NCBI Locus Tag	PSPTO_1649
NCBI Old Locus Tag	PSPTO1649
UniParc	UPI00000088B1
UniProtKB Acc	Q886D0
UniProtKB ID	Q886D0_PSESM
UniRef100	UniRef100_Q886D0
UniRef50	UniRef50_Q4KBS4
UniRef90	UniRef90_D7HXB7

Product

Feature Type	CDS
Coding Frame	1
Product Name	autotransporter
Synonyms
Evidence for Translation
Charge (pH 7)	-13.57
Kyte-Doolittle Hydrophobicity Value	-0.182
Molecular Weight (kDa)	103.6
Isoelectric Point (pI)	5.69

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 278 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001201 (1272 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1649 Search term: autotransporter

Human Homologs

References