Pseudomonas syringae pv. tomato DC3000, PSPTO_1649

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Sequence Data

Strain Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CAGAACGTCGCGAACTGCATTGCCACGCTGGAGCGTAGGGAGCGATGATTGATGTTAACTATCGTGCGCCGCTCCGCGTCGCATGCCGTTCCGGACGCTC TGCGTCCTCTTATTACTTTAGTTAACTTGTGTCACTAATTACCTTAATGCCTATTCCTTGCTGTGCGACAAGGCATAACAGTTTTAATAAATAATTTATA TTGTCCGACAATTCCATCGTCGCCCATCAAGTTAGTGTTGACCTTGAAAGTTTTAATCAGCGCCCGAATACATTTGCGTACAATTAAATAGCCACTATCG ATTTGAGTGGATTGCGTTAATAGACCAAATAAGTTCAATAAATTCATGCAGATATCACTGGATTAAATACCCAAAGATGGCGCTCGTGAATACCCGTCAC TCTGTATCAAAACTGAAATAAAACGGTTGCCAAGTATGTAACTGCGGACTATGTTTTGGCTGCGCTCAATCAGGAGCCGACCATTAGCAGGTGTGCAGGG
DNA Sequence for Gene
>PSPTO_1649
ATGCAAAAGTCGAAGTGTGTGAGTGCTGCCCGTTATTCTTCAAAAACCGTAGCAACTGGCGCACTGTGCGCGCTGTCTTTTACTTTCGGCTGTTCGGCCT ACGCTGATTATGTCGAGCAGGGAAAGTTGGGTGATGCGGCCAGTTGGCGTTCAGCAGAGTTCCAAAGTGACTGGGGCCTGGGCCGCATTCAGGCTGATCA GGCCTACGCTGCTGGCATGACGGGCGCAGGGGTCAAGATCGGTGCGCTGGACTCGGGTTTCGATCCGTCTCACCCAGAAGCCAGCCCGTCCCGCTTTCAG GCAGTAACCGCCACGGGCACTTACGTCAACGGCACACCGTTCAGCGTCACCGGCGCGATCAACCCCAACAACGACACCCACGGAACGCACGTCACCGGCA CCATGGGCGCGGCGCGCGATGGCGTGGAGATGCATGGCGTGGCGTACAACGCGCAAATCTACGTTGGTAACACCAATCAGAACGACAGCTTCCTGTTCGG CCCCAACCCGGACCCGCAGTATTTCAAGGCGGTGTACGGCGCACTGGCTGATGCTGGCGTGCGCGCCATCAACAACAGCTGGGGCAGCCAGCCGGCCGAC GTGACCTACGCCACCGAGTCTGGCGTGCGCGCCGCCTATGCCCAGCATTACAACCGTGGCACCTGGCTGGATGAAGCGGCCAACGTCTCGCGCAAGGGCG TGATCAACGTGTTCAGCGCTGGCAACTCCGGCTACGCCAACGCCAGCGTGCGCGCCTCTTTGCCGTATTTCGAGCCAGACCTCGAAGGCCACTGGCTTGC CGTGTCGGGCCTCGACGCCTCCACCGGTCAACGCTACAACCAGTGCGGCCTGTCCAAATACTGGTGCATCACCATGCCCGGCCGGCTGATCAACAGCACC GTGCCCGGCGGCGGTTACGGCATCAAGTCCGGCACCTCAATGTCTGCACCGCATGCCACCGGCGCACTGGCGCTGGTGATGGAACGCTTCCCGTACCTGA ACAACGAGCAGGCGCTGCAAGTGCTGCTGACCACCGCCACCCAGCTCGATGGCTCGGTCACTCAGGCGCCGACCACCAGCGTCGGTTGGGGCGTGGCCAA TCTGGAGCGGGCGATGCGCGGTCCCGGTCAATTGCTCGGCACCTTCGACGCCAACCTCGGCACAGGCTTGACCGATACATGGAGCAACAATATCTCCGAT CAGGCGTTGATTCAGCGTCAGGCCGAAGACACTGCCGAACACGCCACATGGCAGCAAACACTGATCAGCAAAGGCTGGCAAAACGGCGTCGCCAGCACTG CCAGCCAGCAGGACCAGGCCGACTACGCAACAGGCAGCGCCCGTGCTGCCGCCGCTGCACAGCGCCAGTACCAAGGCAGCCTGATCAAATCCGGTGCGGG CCGGCTGATTCTGCAAGGTGCCAACACTTATCGTGGCGAAACGCTGGTCAACGGCGGCGTGCTGTCGGTCAACGGCTCGCTGGTGTCCGCCGTGCAGGTC AACGCGGGCGGCACGCTGGGCGGCAATGGCCAGATCGGCGGGCTGACTGCGCGTAACGGCGGCGTGGTCGCGCCGGGCAATTCCATCGGCACCTTGCAGG TCAACGGCAACGTCCTCCTTGAGCCAGGTTCGACCTACGCCGTAGAGCTTTCGCCCGCCGCCAGCGACCGCATCGTCGCCACCGGCAGTGCCACCGTGTC AGGTGCCAACATGACCCTGGCGCTTCTGGACAACACGCCGGTTGCCTTGAATTCTGTACCCACCCAAAGCGTTGCAGGCCCTCAGTACAACGTGCTGCAG GCCGCCAACGGCATCAACGGCCAGTTCGGCTCAGTCACTTCAAACTACGCTTTTCTGGGCGGCCGACTCGACTACGCAGCCACCGGCGTTGCGTTGAACA TCGAGCAAACAGCCGCCTTCAACAGCGTTGCACGAACCCCTAACCAAGCTGCCGTGGCGACAGCCGCCGAACAACTCGGTGCAGGCAATGCGGTGTACGA AAACCTGTTACTCACGCAAAACCCGGCCTCTGCCCGCGACAGCTTTCAGCAATTGTCCGGCGAGATTTACCCGGCCATTGGCAGCGTGCTGATCAACGAC AGCCGGCAGGTTCGTGATGCGGTGGGCGAGCGTCTCGGGGCCAGCGTGTTGGGCGGCGAGGGCAACACTGCCGCGCAAGACAATGTCTGGATTAAAGCCT TGGGTGCCTGGGGCAAGACTGATTCGCGCGACGACACCACCGGTTACACCACCTCGATCGGCGGCCTGCTGGCGGGCGTCGATGGCAACGTTGCCGACGA CACGCGTCTGGGCGCCGTCGCGGGTTACAGCGACAGCTCGTTGAACATGGGCTCGGGCACACATTCCCGGGCCTCGGTGGACAGCTACCATCTGGGCGCT TACGTCGGTCATGAAATCGGCGCACTGAGCCTGACCCTCGGCGGCGCACACAGCTGGCACCGCATCGATGCACAACGTGACGTGCAGGTCGGCGGTGCAG CAGGCAAGGAAAAAACCAAACACGATGCCCAGAGCACGCAAGTGTTCACCGAAGCGGCGTATCGCATCCGCTTGCAACCCGCGACCCTCGAGCCGTTCGC CAATCTGGCCTACGTCCACCTCAACACCGACAGCTTCACCGAGAAGGGCGATGCGGCGGCGCTGTCTGCCGGTAGCGATAACCGTGATGCCGTGCTCAGT ACCCTCGGCCTGCGCGCATTGAAAACAATCGCAATCACCGAACGGCAAAAGGTCGACCTGTCCGGCAGCCTCGGCTGGCAGCACAACCTGAGCAGCACCG ATTCCGAACAGCACCTGGCATTCGCCTCGGGTGGTGGCAGTTTCGGCATCGAAAGCTCGCCGCTGGTCCGCGATGCGGCACTGGTCGGCGCCCACGCCAG CGTTGCGCTGAGCAAGGACGCGAGGATCAGCCTCGATTACAGCGGCCAACTGGCCAGCCGTGAAAAAAGTCATGGTGTTGGCCTGAGCCTTAACTGGCAG TTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCAGGCAGTACCCAACTCCAACCCAACCCCTCAACCAAAAAGAACGACGCGCATGCAGATGCATGCGCGCGCGGATTCGTGCGCGTTAACTAAGGACGG TAGTTTCATGAAAGATGCATCCACCACCCGACACACTTCTGTCACACCCCTGCGCCAAGCCATTCGGGCCATCAACCGCGCCTCTTGCGGCGCACTGGCC TGTTACCTCGCGACCTTGGGCGTGGCACATGCTGCGCCCTACGTGGAAGCAGGGCAGGCGGGCAACGCCGCCAGTTGGCGCAGCGCCGAATTCAATGCCG ACTGGGGTCTGGGCGCGATCAACGCCGATCAGGCTTACGCCGCTGGCTACAGTGGCAAAGGCATCAAACTGGGCATCTTCGACCAGCCGGTCTACGCCCC GCACCCGGAATTCTCCAGCGCCAACAAAGTGGTCAATCTGGTCACCAGCGGCATTCGCGAATACACCGACCCGTACATCCCGGTGAAGGCGGGCGACGCC
Amino Acid Sequence
>autotransporter
MQKSKCVSAARYSSKTVATGALCALSFTFGCSAYADYVEQGKLGDAASWRSAEFQSDWGLGRIQADQAYAAGMTGAGVKIGALDSGFDPSHPEASPSRFQ AVTATGTYVNGTPFSVTGAINPNNDTHGTHVTGTMGAARDGVEMHGVAYNAQIYVGNTNQNDSFLFGPNPDPQYFKAVYGALADAGVRAINNSWGSQPAD VTYATESGVRAAYAQHYNRGTWLDEAANVSRKGVINVFSAGNSGYANASVRASLPYFEPDLEGHWLAVSGLDASTGQRYNQCGLSKYWCITMPGRLINST VPGGGYGIKSGTSMSAPHATGALALVMERFPYLNNEQALQVLLTTATQLDGSVTQAPTTSVGWGVANLERAMRGPGQLLGTFDANLGTGLTDTWSNNISD QALIQRQAEDTAEHATWQQTLISKGWQNGVASTASQQDQADYATGSARAAAAAQRQYQGSLIKSGAGRLILQGANTYRGETLVNGGVLSVNGSLVSAVQV NAGGTLGGNGQIGGLTARNGGVVAPGNSIGTLQVNGNVLLEPGSTYAVELSPAASDRIVATGSATVSGANMTLALLDNTPVALNSVPTQSVAGPQYNVLQ AANGINGQFGSVTSNYAFLGGRLDYAATGVALNIEQTAAFNSVARTPNQAAVATAAEQLGAGNAVYENLLLTQNPASARDSFQQLSGEIYPAIGSVLIND SRQVRDAVGERLGASVLGGEGNTAAQDNVWIKALGAWGKTDSRDDTTGYTTSIGGLLAGVDGNVADDTRLGAVAGYSDSSLNMGSGTHSRASVDSYHLGA YVGHEIGALSLTLGGAHSWHRIDAQRDVQVGGAAGKEKTKHDAQSTQVFTEAAYRIRLQPATLEPFANLAYVHLNTDSFTEKGDAAALSAGSDNRDAVLS TLGLRALKTIAITERQKVDLSGSLGWQHNLSSTDSEQHLAFASGGGSFGIESSPLVRDAALVGAHASVALSKDARISLDYSGQLASREKSHGVGLSLNWQ F
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site