Pseudomonas syringae pv. tomato DC3000, PSPTO_1236 (algL)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1236
NCBI Old Locus Tag	PSPTO1236
Name	algL Synonym: PSPTO1236
Replicon	chromosome
Genomic location	1356280 - 1357416 (- strand)

Cross-References

RefSeq	NP_791066.1
GI	28868447
Entrez	1182872
INSDC	AAO54761.1
NCBI Locus Tag	PSPTO_1236
NCBI Old Locus Tag	PSPTO1236
UniParc	UPI000000871E
UniProtKB Acc	Q887Q5
UniProtKB ID	ALGL_PSESM
UniRef100	UniRef100_Q887Q5
UniRef50	UniRef50_Q9L7P2
UniRef90	UniRef90_Q9L7P2

Product

Feature Type	CDS
Coding Frame	1
Product Name	alginate lyase
Synonyms
Evidence for Translation
Charge (pH 7)	3.81
Kyte-Doolittle Hydrophobicity Value	-0.593
Molecular Weight (kDa)	42.5
Isoelectric Point (pI)	8.29

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 12 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002119 (490 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1236 Search term: algL Search term: alginate lyase

Human Homologs

References