Pseudomonas syringae pv. tomato DC3000, PSPTO_1236 (algL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0045135 poly(beta-D-mannuronate) lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042122 alginic acid catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc alginate degradation InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.50.10.100 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 28 364 0.0
SUPERFAMILY SSF48230 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 22 363 7.51E-67
Pfam PF05426 Alginate lyase IPR008397 Alginate lyase domain 65 305 3.9E-63
Hamap MF_00557 Alginate lyase [algL]. IPR022859 Alginate lyase 2 371 66.733582
CDD cd00244 AlgLyase IPR022859 Alginate lyase 24 363 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.