Pseudomonas syringae pv. tomato DC3000, PSPTO_1236 (algL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Sequence Data

Strain Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CCGAAGATTCTCATCTGGGAATTCTCGCCGCTGTATCGCCTGGACCAGGAGACCATCTATCGCCAGATGATGGCGCTGCTCGACAACGGCTGCGAAGGCA AGCCTGCGGTCATGAGCGCCAGCACTACCTTGAAGCCGGGCAACAACGAAGTGCTGGTCAACGGCAAGAACGGCATCAAGGATATTCGCAATGGCAGCAA CCAGATCGATATCCGCTTTGACGACACGTCGGTGAAAACCCTCCAGGCCAGACTCTGGTACATGAACGGTCGCCACGAGGACCTGAAAATCGAGAAGCCG GAAACTTCCGATACCGACGGACGCTTCGCCTTTGAATTGCGCGAAGACGAGGATTGGGCCGACCAGCAACTGCTGGCACTCGAAATCCAGGGACCGGAAG CAGGCACGGCACCGCAGAAAGTGGCTGCCAAAGTATGCAAACGCAACGTGTTCCCGAGCGCTGCGAAACACACCGCTCAAGCTGGACTATGAGGTGACTT
DNA Sequence for Gene
>PSPTO_1236 |algL
ATGCAGACTCCGAAACTGATACGCCCTACCCTGCTGTCGATGGCAATAGTGTCATCGATGGCCTGGGCTACGGGTGCGTCCGCCGCACTGGTTCCACCCA AGGGCTATGATGCCCCGATCGAAAAGATGAAGACCGGCGATCACAATTTCACCTGTGAAGCCATTCCCAAGCCTTACACCGACAAGCTGGTTTTCCGCAG CAAGTACGAAGGTTCGGACAAGGCGCGCGCGACACTCAATGCAGTGTCCGAAGAAGCTTTTCGTGACGCGACCAAGGACATCACCACCCTTGAGCGTGGC GTCAGCAAAGTCGTCATGCAGTACATGCGTGACGGTCGCCCGGAACAGCTCGATTGCGCGCTGAACATGATGACCACGTGGGCAAAAGCCGATGCGCTGG AATCCCGCGAGTTCAACCACACCGGCAAGTCCATGCGCAAATGGGCACTGGGCAGCATGTCCTCTGCTTACCTGCGCTTGAAGTTCTCCGATTCGCACCC GTTGGCCAATCGCCAGCAGGACGCGCAGATCATCGAGGCCTGGTTCAGCAAGCTGGCCGATCAGGTGGTCAGCGACTGGAGCAATCTGCCGCTGGAAAAA ATCAATAACCACTCGTACTGGGCTGCGTGGTCGGTGATGTCCACCGCTGTCGTGACCAACCGCAAGGACCTGTTCGATTGGGCGGTGAAGGAATTCAAGG TCGCCGCCAATCAGGTGGACAAGGACGGCTACCTGCCTAACGAGATGAAGCGCCGTCAACGTGCGCTGTCGTATCACAACTACGCCCTGCCGCCGCTCGC GATGATCGCAAGCTTCGCTCAGGCCAACGGTGTTGATCTGCGTCCGGAAAACAATGGTGCGTTGAAGCGTCTGGGTGACCGTGTGCTGGCCGGCGTCAAA GACCCTGCATCGTTTGCGGAACACAACGGTGAAAAACAGGACATGACGGACCTCAAGAAAGATCCGAAATTTGCCTGGCTCGAACCGTACTGCTCGCTCT ACACCTGCAGCCCGGACGTGCTGGAAGATAAACACGAAAAGCAGCCGTTCAAAACCTTCCGCCTGGGCGGTGACCTGACCAAGGTCTACGACCCGACCCA TGAAAAAGGCGACAAGGGCGACAACGACGGCTCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTCACCGTCGTTATCTGTAGGAGCGGACTTGTCCGCGAAGACATCTGCCCAGGCGATGCATCCATAAAGACGGATCTCGCCTGGCCAGCTTCGCCGACAA GCTGTGAAGCGATTTACCCCCCTGTTTCAACGGGGGGTTTGGGGGGGCTTTGAGCCCTTGACTGTTGGACAAACGGAGAGATCAGGATGGTTTTCTCATC CAACGTGTTCCTGTTCATGTTCCTGCCGATCTTCCTCGGCTTGTACTACCTGAGCGGGCAACGCTATCGCAATCTGCTGCTGCTGATTGCCAGCTATATC TTCTACGCCTGGTGGCGTGTGGACTTCCTGGCGCTGTTCATCGGCGTGACCGTCTGGAACTACTGGATCGGCCTCAAAGTGGGCGCAGCAGGTGTGCGGA CCAAACCGGCACAGCGCTGGCTGCTGCTCGGCGTGATCGTAGACCTGTGCATTCTGGGCTACTTCAAATACGCCAACTTCGGCGTGGACAGCATCAATGC
Amino Acid Sequence
>alginate lyase
MQTPKLIRPTLLSMAIVSSMAWATGASAALVPPKGYDAPIEKMKTGDHNFTCEAIPKPYTDKLVFRSKYEGSDKARATLNAVSEEAFRDATKDITTLERG VSKVVMQYMRDGRPEQLDCALNMMTTWAKADALESREFNHTGKSMRKWALGSMSSAYLRLKFSDSHPLANRQQDAQIIEAWFSKLADQVVSDWSNLPLEK INNHSYWAAWSVMSTAVVTNRKDLFDWAVKEFKVAANQVDKDGYLPNEMKRRQRALSYHNYALPPLAMIASFAQANGVDLRPENNGALKRLGDRVLAGVK DPASFAEHNGEKQDMTDLKKDPKFAWLEPYCSLYTCSPDVLEDKHEKQPFKTFRLGGDLTKVYDPTHEKGDKGDNDGS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site