Pseudomonas sp. FH4, H097_RS12840

Gene Feature Overview

Strain	Pseudomonas sp. FH4 - Assembly GCF_000510915.2 GCF_000510915.2|latest
Locus Tag	H097_RS12840
NCBI Old Locus Tag	H097_14321
Name	Synonym: H097_14321
Replicon	scf_29086_22.1_contig_1
Genomic location	191459 - 194638 (+ strand)

Cross-References

RefSeq	WP_032860482.1
GI	696284752
INSDC	ETK17836.1
NCBI Locus Tag	H097_RS12840
NCBI Old Locus Tag	H097_14321
UniParc	UPI0003DCBE20
UniProtKB Acc	W2DGE9
UniProtKB ID	W2DGE9_9PSED
UniRef100	UniRef100_W2DGE9
UniRef50	UniRef50_Q880Q4
UniRef90	UniRef90_Q4KBN7

Product

Feature Type	CDS
Coding Frame	1
Product Name	transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-10.91
Kyte-Doolittle Hydrophobicity Value	0.313
Molecular Weight (kDa)	115.2
Isoelectric Point (pI)	5.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name	Definition	Accession	Model Type (?)	SNP	Cutoff	Bit Score	Percent Identity	CARD Version
adeF	AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879]	ARO:3000777	protein homolog model		Strict	1343.9	66.98	3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000417 (2093 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: H097_RS12840 Search term: transporter

Human Homologs

References