| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas sp. FH4 - Assembly GCF_000510915.2 |
| Species | Pseudomonas sp. |
| Strain | FH4 |
| Description/Title | Sample from Pseudomonas sp. FH4 |
| Annotated Genes | 5483 |
| Partial Genes | 162 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | United Kingdom |
| Isolation Source | fresh water |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 1995 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 63 |
| Contig N50 | 324427 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02597451 |
| NCBI Taxonomy ID | 1284393 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5448 |
| CDS | 5386 |
| tRNA | 58 |
| pseudo | 27 |
| ncRNA | 2 |
| rRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2315 |
| Cytoplasmic Membrane | 1269 |
| Unknown | 1260 |
| Periplasmic | 195 |
| Outer Membrane | 159 |
| Unknown (This protein may have multiple localization sites) | 125 |
| Extracellular | 63 |
| Flagellar | 18 |
| Fimbrial | 10 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |