Pseudomonas sp. VLB120, PVLB_25290

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_25290
Name
Replicon chromosome
Genomic location 5549568 - 5550560 (+ strand)

Cross-References

RefSeq YP_008765964.1
GI 557225749
Entrez 17499697
INSDC AGZ37837.1
NCBI Locus Tag PVLB_25290
UniParc UPI0003C09532
UniProtKB Acc U5VLW9
UniProtKB ID U5VLW9_9PSED
UniRef100 UniRef100_U5VLW9
UniRef50 UniRef50_Q4K3I3
UniRef90 UniRef90_Q88C44

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 3.13
Kyte-Doolittle Hydrophobicity Value -0.082
Molecular Weight (kDa) 36.8
Isoelectric Point (pI) 7.75

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 249 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000800 (1482 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_25290

Human Homologs

References

No references are associated with this feature.