Pseudomonas sp. VLB120, PVLB_25290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACAACGACTCGTTTCAAACAATATTTCATTTCACACCCCCTAGCGCCGAACGGCGCAAACCGTCGCATCCGCTGAAAATGCGTCTCGGGTGTTTCCTCCG GCCACGGTGGTAAGCGGGCAGCTCAGCCGGGGCCAAGCTGGCCAACCAACCCCAATTCTGCTGCGGCGTCGAACGGTCAGGCTCGGCCAGACTTGGCTCG CCAGGCATCACCCGGAATGCCACTGGGCCAGCATTAGACGATTAGGCGGCTGGCGTCTGGCTATGAAGCGCGCACCATCGGTCGCTGCCCAGGGCGGCCA TCAACTCGCGGCGAGTGAATGCTTCGCCATCCAGCAGCACAATGACTTCACGCCCCTGGGCACGCTGCGGGGCCATCCACGGCCACACATCGAGGCCGTA TTTGGCGTCGTACCCGTCTAATTCACTTCTATCGCCGTTGTTAAAGTGAAAAGGCACGCTAATTGCTCCAGAATCTGCCCAGCCCAACGGGATTCCGAGC
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| DNA Sequence for Gene |
>PVLB_25290
ATGCTGCACAGCCACCTCACCACCCTCAACGCGGTTTCGCTGATTCTCAACCTCTTCCAGGAAGAAGGTTGCGAGGCTGCGTCGCTGCTGGCCGGCAGTG GCATAGGCCCGGCAGACCTGGGGCATCCCGATGCGCGCATCACCACCCAGCAGGAGCTGCAGGTCTGCGCCAATGCTGTGGCTCGGCGCGAGGATATCGG CCTGGAATTGGGCCGGCGGATGCATGTGTCGTGCTATGGCATGCTCGGTTACGCCTTGCTCTCCAGTGCCACTTTGGGTGACGCCCTGCGCCTGGCGTTG CGCTACCCGGCACTGCTGGGAACAGTCTTCCAGCTGCGCCTGGTGGATGATGGCCAGCGCGTCTGGTTCAGTGCCAGCGACTACCGCGACAGCCCAGCGC TGGCGGCCTTCAATGCCGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGCGATGACCTGCTGGGACGCACACTGCCGCTGCTTGGTGCCCGCTTCGAACA CCGTCGGCCCGTCTACCATGCGCTCTATACCGGTGCATTCCAGTGTCCGCTGGGTTTCGATGCCGAGGACAATGCCTTCGCCTTCGAGCGCCGCTGGCTA GACACGCCACTGCCACTGGCCGACCCCATCACGCACAAAGCCATGAGCGAGCGTTGCCGGCGCCTGAACCTGGAGTTCACCGGTCGCCAGGCCTGGCTCG GGCGCATTCGCCAATTACTGCTGCAACAGCTGGATGCCGCACCTGGGTTGGACGGCCTGGCGCGGCAGATGAACTGTTCATCGCGCACCCTGCGCCGGCA CCTGCAAGCGCTGGGCTGCAGTTATCAACAACTGCTGGATGAGCTGCGCTTCGAGCGGGCCAAGCAGCTGCTGGCCGATGCGCAGATGCCGATCTACCGG ATCGCCGAAACCCTGGGATTTAGCGAAACAGCGAGCTTTCGCCATGCGTTCCAGCGCTGGAGTGGTGTGGCGCCAAGTCATTATCGAGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGTCTTATCGCCGGCAAGTCGGCCCATGGGTCGTTGAACGGCCAACGAGCTTGGCCACATCTATCCCCTTTTGGCCGTTTGCGTCGTTCTCCACCCCA GGCCTGCCCATGACAATGGGCCTACGCCAGTAAAACCGGAGAACAACAATGCTGACGATCTATTCCGATGATCATCGCCTGCACCACGGCCGCTGCGAGC TGATCGACGGCAAGCTGATGCCTTGCTTCGAAATGCCATCGCGCGCCGATCATGTGCTCGAACGCGTGAAAAAGCGCAACCTCGGCGAGGTAAAAGGGCC GAGCGACTTTGGTCGTGCGCCATTGCAGCGCATCCACAGCGCCGAGTACCTGAACTTCTTCGAAGGTGCGTGGGCACGTTGGGCCGCATTGGGTCACGAG GGCGACTTGCTGCCCTTCACCTGGCCCGCCCGCACATTGCGCCAGGTCAAGCCCACTGGCCTGCATGGCGAACTGGGCTACTACAGCTTCGACGCTGGCG
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MLHSHLTTLNAVSLILNLFQEEGCEAASLLAGSGIGPADLGHPDARITTQQELQVCANAVARREDIGLELGRRMHVSCYGMLGYALLSSATLGDALRLAL RYPALLGTVFQLRLVDDGQRVWFSASDYRDSPALAAFNAEFCLVSLKVICDDLLGRTLPLLGARFEHRRPVYHALYTGAFQCPLGFDAEDNAFAFERRWL DTPLPLADPITHKAMSERCRRLNLEFTGRQAWLGRIRQLLLQQLDAAPGLDGLARQMNCSSRTLRRHLQALGCSYQQLLDELRFERAKQLLADAQMPIYR IAETLGFSETASFRHAFQRWSGVAPSHYRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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