Pseudomonas sp. VLB120, PVLB_22775

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_22775
Name
Replicon chromosome
Genomic location 5021541 - 5022077 (- strand)

Cross-References

RefSeq YP_008765461.1
GI 557225246
Entrez 17499179
INSDC AGZ37334.1
NCBI Locus Tag PVLB_22775
UniParc UPI0003C06DD8
UniProtKB Acc U5VKJ5
UniProtKB ID U5VKJ5_9PSED
UniRef100 UniRef100_U5VKJ5
UniRef50 UniRef50_Q88QK5
UniRef90 UniRef90_Q88QK5

Product

Feature Type CDS
Coding Frame 1
Product Name
single-stranded DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.80
Kyte-Doolittle Hydrophobicity Value -0.978
Molecular Weight (kDa) 19.8
Isoelectric Point (pI) 5.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 586 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001478 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_22775

Human Homologs

Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 3.5e-16
Percent Identity: 39.1

References

No references are associated with this feature.