Pseudomonas sp. VLB120, PVLB_22775

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psv03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psv03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00984 Single-stranded DNA-binding protein. IPR011344 Single-stranded DNA-binding protein 5 115 36.125835
MobiDBLite mobidb-lite consensus disorder prediction - - 149 163 -
PANTHER PTHR10302 SINGLE-STRANDED DNA-BINDING PROTEIN IPR011344 Single-stranded DNA-binding protein 3 142 1.2E-29
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 3 178 1.51E-59
MobiDBLite mobidb-lite consensus disorder prediction - - 111 178 -
NCBIfam TIGR00621 JCVI: single-stranded DNA-binding protein IPR011344 Single-stranded DNA-binding protein 3 178 5.9E-58
MobiDBLite mobidb-lite consensus disorder prediction - - 111 148 -
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 167 6.7E-48
PIRSF PIRSF002070 SSB IPR011344 Single-stranded DNA-binding protein 1 174 1.3E-36
Pfam PF00436 Single-strand binding protein family IPR000424 Primosome PriB/single-strand DNA-binding 5 107 2.1E-37
CDD cd04496 SSB_OBF IPR000424 Primosome PriB/single-strand DNA-binding 8 103 3.06437E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.