Pseudomonas sp. VLB120, PVLB_11790

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas sp. VLB120
GCF_000494915.1|latest
Locus Tag
PVLB_11790
Name
Replicon chromosome
Genomic location 2590851 - 2592266 (- strand)

Cross-References

RefSeq YP_008763273.1
GI 557223058
Entrez 17496962
INSDC AGZ35146.1
NCBI Locus Tag PVLB_11790
UniParc UPI0003C09303
UniProtKB Acc U5VHM9
UniProtKB ID U5VHM9_9PSED
UniRef100 UniRef100_U5VHM9
UniRef50 UniRef50_Q88HD3
UniRef90 UniRef90_Q88HD3

Product

Feature Type CDS
Coding Frame 1
Product Name
RND efflux system outer membrane lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7) -8.28
Kyte-Doolittle Hydrophobicity Value -0.262
Molecular Weight (kDa) 51.0
Isoelectric Point (pI) 4.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 301 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003062 (529 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PVLB_11790

Human Homologs

References

No references are associated with this feature.