Pseudomonas sp. VLB120, PVLB_04300

Gene Feature Overview

Strain	Pseudomonas sp. VLB120 GCF_000494915.1|latest
Locus Tag	PVLB_04300
Name
Replicon	chromosome
Genomic location	984619 - 986052 (- strand)

Cross-References

RefSeq	YP_008761794.1
GI	557221579
Entrez	17495445
INSDC	AGZ33667.1
NCBI Locus Tag	PVLB_04300
UniParc	UPI0003C08247
UniProtKB Acc	U5V9V2
UniProtKB ID	U5V9V2_9PSED
UniRef100	UniRef100_U5V9V2
UniRef50	UniRef50_Q887N8
UniRef90	UniRef90_B1J179

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent RNA helicase RhlB
Synonyms
Evidence for Translation
Charge (pH 7)	3.06
Kyte-Doolittle Hydrophobicity Value	-0.400
Molecular Weight (kDa)	53.0
Isoelectric Point (pI)	7.77

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 614 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001808 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PVLB_04300 Search term: ATP-dependent RNA helicase RhlB

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000486306 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000486443 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000496222 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000382840 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000495377 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000496052 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000496663 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000493475 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000487224 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000392494 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000478443 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000494040 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000486516 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000487062 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000494518 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000493819 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000486514 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000486720 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8
Ensembl 110, assembly GRCh38.p14	ENSP00000496524 DEAD-box helicase 3 X-linked [Source:HGNC Symbol;Acc:HGNC:2745] E-value: 3.4e-58 Percent Identity: 35.8

References