Pseudomonas sp. VLB120, PVLB_04300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGAGTCGGCGCAGCAGGTCATCGCCTTGATCAAGGCCGAGCAGGCCAAGGGCATCAGCCTGTCGCGAATCTTCCTCGCCGGTTTCTCCCAGGGCGGCGCC GTGGTGCTGCACACCGCTTATATAAAGTGGCAGGAGGCACTGGGAGGGGTAATCGCGCTGTCCACCTACGCTCCAACCTTTACCGACAGTCATCAGCTCA GCGCGTGCCAGCAACGCACGCCAGCCCTGTGCCTGCATGGTGTGCACGATTCGGTGGTGATCCCTTCGATGGGCCGTACGGCCTTCGAATTCCTCAATAC TTGGGGCGTTGCCGCCCGCTGGCAGGAATACCCCATGGAACATGAAGTGATGGTCGAAGAACTGGGCGACATCCACGACTGGTTGAGCCAGCAACTGCAA TAGGCCAAGCGTGTAGCTGCCTGCGCATTCCACTACGCCGCGCCTGAATCTTGCATTACACTGCCCGGCGTACATTCCTTAACCAATTGATGAGACGATC
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| DNA Sequence for Gene |
>PVLB_04300
GTGCTCAAGGCACTCAAGAAAATATTCGGCAAGGGAGACGCCGCGCCTCAGGCCGTCGAACCCGCAGCGCCGGTGAACAAGTCCGCGCCGGCGCCTACCG TGCAACCCGAAGCCGCTCCGGTCGAGGCCAGCACCCAACCCACAGCCCCTGCCGCCGCCGACAAACCGGCCAAAGACAAACCGCGCCGCGAGCGCAAACC CAAACCACAAGCCAGCCTGTGGAAACCTGAAGACTTCGTGGTCGAGCCACAGGAAGGCAAGACACGCTTCCATGACTTCAAGCTCTCCAACGAGCTGATG CATGCCATCCACGACCTGGGCTTCCCATACTGCACGCCGATCCAGGCCCAGGTGCTCGGCCATACCCTGCGCGGCAAGGACGCCATCGGCCGGGCCCAGA CCGGTACCGGCAAGACCGCAGCGTTCCTGATCTCGATCATCTCGCAGCTGCAGCAGACACCACCGCCCAAGGAACGCTACATGGGCGAGCCTCGCGCGCT GATCATCGCCCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCGATGGCCCTGACCAAGTACAGTGGCCTGAACGTGATGAGCTTCGTCGGCGGC ATGGACTTCGACAAGCAGCTCAAGAGCCTGGAAGCGCGCCACTGCGACATTCTCGTCGCTACACCGGGCCGCTTGCTGGACTTCAATCAGCGCGGCGAAG TGCACCTGGACATGGTCGAAGTGTTGGTGCTGGATGAGGCCGACCGCATGCTGGACATGGGCTTCATCCCGCAGGTCCGCCAGATCATTCGCCAGACACC GCCCAAGAGCGAGCGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGACGATGTGATGAATCTGGCCAAGCAGTGGACCACCAACCCGGAAATCGTCGAG ATCGAACCGGAGAACGTGGCCAGCGAGACGGTCGAGCAGCATGTCTATGCAGTCGCGGGCAGCGACAAGTACAAGCTGCTGTACAACCTGGTGACCCAGA ACAAGTGGGAACGGGTGATGGTATTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAAGAGAAGCTGGTGCGCGATGGCATCAATGCCGCCCAACTTTC CGGCGACGTGCCACAGCACAAGCGGATTCGCACCCTCGAGAACTTCCGCGAAGGGCGCATCACCGTGCTGGTGGCCACCGACGTGGCGGGGCGCGGCATT CACATCGACGGCATCAGCCATGTGATCAACTTCACCCTGCCGGAAGACCCGGATGACTATGTGCACCGCATCGGTCGTACCGGACGGGCGGGCACCAGTG GTGTGTCGATCAGCTTCGCCGGCGAGGATGACTCCTACCAGCTACCAGCTATCGAGGCGCTACTGGGGCGCAAGATCAAATGCGAGATGCCACCGGATGA ACTGCTCAAGCCGGTGCCGCGCAAGCATCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGTGGTGACCTTTTCGCGGGTAAACCCGCTCCCACAGGCCAGCGCCACCCTGTGAGAGCGGGTTTACCCAGGAATCGGGGCAAAGCCCCGGTCATCCA CCACACACCTACCAGCGCCCCGCCGCCTCCTGGTCACTCTGCTTCCCTTCGACCCACCGCGGCCCTTCCTGGGTATTTTCCTTCTTCCAGAACGGTGCCC GCGTCTTCAGATAATCCATGATGAAATTGCAGGCATCGAACGCTGCCTGCCGATGGGCACTGGCCACGCCCACGAACACGATCGGCTCCCCCGGCTCCAG GGCACCGATACGGTGCAACACCTCCACCTTGAGCAACGGCCAGCGCTGTTCGGCGTCGACCACAATCTTGGCCAAGGCCTTCTCGGTCATGCCCGGGTAG TGCTCAAGGAACATCCCGGCCACTTCCCGGCCATCGTTGAAGTCGCGCACATAGCCGACGAAGCCGACCACCGCTCCCACACCGACATTCGCGGCATGCA
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MLKALKKIFGKGDAAPQAVEPAAPVNKSAPAPTVQPEAAPVEASTQPTAPAAADKPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELM HAIHDLGFPYCTPIQAQVLGHTLRGKDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGG MDFDKQLKSLEARHCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPEIVE IEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRITVLVATDVAGRGI HIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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