Pseudomonas sp. VLB120, PVLB_00430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. VLB120
GCF_000494915.1|latest |
| Locus Tag |
PVLB_00430
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 96331 - 97641 (- strand) |
Cross-References
| RefSeq | YP_008761023.1 |
| GI | 557220808 |
| Entrez | 17494653 |
| NCBI Locus Tag | PVLB_00430 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
16S rRNA methyltransferase B
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -0.91 |
| Kyte-Doolittle Hydrophobicity Value | -0.127 |
| Molecular Weight (kDa) | 47590.0 |
| Isoelectric Point (pI) | 6.83 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 581 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000017 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PVLB_00430
Search term: 16S rRNA methyltransferase B
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.4e-26
Percent Identity:
29.7
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.4e-26
Percent Identity:
29.7
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.4e-26
Percent Identity:
29.7
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.4e-26
Percent Identity:
29.7
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.4e-26
Percent Identity:
29.7
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.4e-26
Percent Identity:
29.7
|
References
No references are associated with this feature.