Pseudomonas sp. VLB120, PVLB_00430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. VLB120, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCCCGATGTTGCTCAAGGTGGTTACCCCGATCAGCGCCGACGACACTGGTGGCAGCCTGCACGACCGCCTTGCCGAAATGGGACCGCCGGCCGTGG TGCAGGTCATCGCAGGCCTGGCCGACGGCACCCTGCAGGGTGAAGTACAAGACGATGCCCTGGCCACCTACGCTCACAAGCTGAACAAGGACGAGGCCCG CATCGACTGGAGCCGCCCAGCCGTCGAGTTGGAGCGCCTGATTCGCGCGTTCAACCCATGGCCGGTGTGCCACAGCACCCTGGATGGCGAGAGCGTCAAA GTGCTGGCCGCCAACGTGTCCACAGGCAAAGGCGCCCCGGGTGAAATCCTTTCCGCCAGCAAGGACGGCCTGGTCGTCGCCTGTGGCGAGCAGGCCTTGA GCCTGACCCGCCTGCAATTGCCCGGCGGCAAGGCCCTGGCCTTCAGTGACCTGTTCAACAGCCGCCGCGAGAAGTTCGCCAGCGGCAAGGTGTTGGGCCA
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| DNA Sequence for Gene |
>PVLB_00430
ATGAACCCACGCCTGGCCGCCGCCCGCGCCCTGGCCGCTGTCCTGAGCGGCAAGGCCTCGCTGAACAGCTCGTTGCCGGCACAACTGGACAAGGTCGATG AGCGAGACCGAGGCCTCACCCAGGACCTGGCATTCGGCACCGCCCGCTGGCAGCCTCGCCTGGACCTGCTGGCTGCGCAGTTGCTGCAAAAGCCGTTCAA GGCCGCCGACTGCGATGTGCAGGCATTGTTGCTGGTCGGCCTGTACCAGCTGTTCTACACCCGCATTCCGGCCCATGCCGCCATCGGGGAAACCGTTGGC TGCGCCGATAAGCTGAAAAAACCGTGGGCCAAGGGCCTGCTCAACGCCGTGCTGCGCCGCGCCCAGCGCGAAGGCGAAGAACTCCTCGCCGGCCTGGAGC GCGATCCGGTGGTGCGCACCGCTCACCCGCGTTGGCTGCAGAAATCGCTGAAAGCCTTCTGGCCCGAGCAGTGGGAAGCCATTTGCGCCGCCAACAATGC CCATCCGCCGATGATCCTGCGGGTCAACCGCCGTCATCACAGCCGTGATGCCTATCTTGGCCTGCTGGCCGAGGCGGGCATCGCCGCCACCCCGTGCCGG TTCAGCCGCGACGGTATCCTGCTGGCTGAAGCCTGCGATGTTCGCCAACTGCCGGGCTTCGCCGAAGGTTGGGTCAGCGTACAGGACGAGGCCGCGCAGC TGTCCGCCGACCTGCTGGAACTGGCCCCAGGCCAACGCGTGCTCGACGCCTGCTGCGCCCCTGGCGGCAAAACCTGCCACCTGCTCGAAGCCGAAGCGGG CCTGGCCCATGTCGTGGCCATCGACCTGGAAGCCAAGCGCCTGACCCGTGTGCGCGAGAACCTCGACCGTCTGCAACTGGACGCCGAGCTGATTGCCTGC GACGCCCGTGACACCGCCAGTTGGTGGGATGGCAAGCCGTTCCAGCGAATCCTGCTCGACGCACCGTGCTCGGCCACGGGCGTGATCCGCCGTCACCCGG ACATCAAGCTGACCCGTCAGGCCGACGACATTCCGGCCCTGGCCACTCTGCAAGGCGAATTGCTCGATGCTCTGTGGCCGACGCTCGAAGTGGGCGGCAT CCTGCTCTACGCCACCTGCTCGAGCCTGCCGACGGAAAACACCGAAGTGATCGACGCCTTCCTCACCCGCACCCCAGGTGCCCGTGAACTCGACCTGGCG ACCGAGGCCGGCCAGCGCCAGCCTCACGGGCGCCAGCTGTTGGCCCAGGAAGGCGGCCATGACGGCTTCTACTATGCCAAGCTGATCAAGATTGCCGCCT CGCGTGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGAAAAAAGGTTAGGGAGTAGCGGATGAAGATCATCATCCTCGGCGCAGGGCAGGTCGGCGGAACGCTGGCCGAACACTTGGCCAGCGAAGCCAACGAC ATCACCGTGGTCGACACCGACGGCGAACGCCTGCGTGACCTGGGCGACCGCCTCGATATCCGCACGGTGCAGGGTCGCGGCTCGTTACCCACCGTGTTGC GCCAGGCCGGGGCCGACGACGCCGATATGCTGGTGGCGGTGACCAACAGCGACGAAACCAACATGGTGGCCTGCCAGGTCGCCTACTCGCTGTTCCATAC CCCGACCAAAATCGCGCGGGTGCGTGAGTCTTCCTATCTGACCCGTGAAGAGCTGTTCGACAACGACCATATCCCGGTGGACGTGCTGATCAGCCCAGAA CAGGTAGTGACCAACTACGTCAAACGCCTGATCGAACACCCCGGTGCTCTGCAGGTGATCGACTTCGCCGAAGGCAAGGCGCAACTCGTTGCGGTGAAGG
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| Amino Acid Sequence |
>16S rRNA methyltransferase B
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADCDVQALLLVGLYQLFYTRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRRAQREGEELLAGLERDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLGLLAEAGIAATPCR FSRDGILLAEACDVRQLPGFAEGWVSVQDEAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLAHVVAIDLEAKRLTRVRENLDRLQLDAELIAC DARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGGILLYATCSSLPTENTEVIDAFLTRTPGARELDLA TEAGQRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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