Pseudomonas chlororaphis subsp. aureofaciens 30-84, PCHL3084_RS00030 (clpV2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCGCCTGCTACCGTACCTCGGCCTGCTCAGCCTGCGGGCCCACTCGGCGGCATTGATCGAGGCCGTGCTGCGTTACTACTTCAAGCATGCGGACCTGG TGATCGAGCAGTGCATCGAGCGTCGGGTGGAAATTCTCGAAGAGCAGCGCAACCGCCTGGGCCGCGCCAACAGCCAGCTCGGCGAGGACCTGGTGCTGGG CGAACGGGTGCGCGATCGCAGTGGCAAGTTCCGCATCCATATCCGCCAGCTCGACTGGCAACGCTTCCACGAATTCCTGCCGATCGGTTTCGGCTACCAG CCGCTGTGCGCGCTGGTGCGGTTCACCTTGCGTGACCCGCTGGACTACGACATTCGCCTGGTCCTGCGCCAGGAAGAAATCCGCGAACTGCGCATCGGTG AGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTCGGCCGCGAACGCGCGGACGGCGTGGTGACCCTGGGCAGCAAAATTCATTAAGGACAGATGAC
|
|
| DNA Sequence for Gene |
>PCHL3084_RS00030
|clpV2
ATGATCAACGTAGACCTGCAGCAACTGATCCAGGCGCTGGACGCCGAAACCCGCCGTGACCTGGAAAGCTCCGCCGAACGCTGCGTCGCCCGTGGCGGCA GCAAGATCCTGGTCGAAGACCTGCTGCTGGGCTTGCTGGAGCGTCCGCAAGGCTTGCTCGCACGCGCGTTGCAGGACGCCGAAGTGGATGCCGGCGAGCT GAGCGCGGCGCTGCAATCGCGGGTCGAGCACAGTGCCTCGCGCAACCCGGTGTTCGCCCCGGAGCTGGTGCAGTGGCTGCAGGACGCCTTGCTGGTGGCC AACCTCGAACTGGGCCAGAGCCAGGTCGAGCAGGCGGCGCTGATCCTCGCGCTGCTGCGCAACCCGATGCGTTACGCCGGTAGCCGCTACCAGCCATTGC TGGCCAAGTTGAACATCGAGCGCCTGAAAGATTTCGCCCTGTCGCAGAAGGAAGAGCCGGCCAGCGGCAAGCCGGCGGCGCCGGGCGAATCGCTGTTGCA GCGCTTCACCCACAACCTGACCCAGCAGGCGCGCGAGGGCAAGCTCGACCCGGTGCTGTGCCGCGATGGCGCGATCCGCCAGATGGTCGACATCCTCGCC CGTCGCCGCAAGAACAACCCGATCGTGGTCGGCGAAGCCGGTGTCGGCAAGACCGCGGTGGTCGAAGGCCTGGCCTCGCGCATCGCCGCCGGTGAAGTGC CGCAAGTGCTCAAGGGCGTCGAGCTGCTGTCGCTGGACATGGGCCTGCTGCAAGCGGGCGCCAGTGTGAAGGGCGAGTTCGAGCGCCGCCTCAAGGGCGT GATCGACGAGGTCAAGGCTTCGCCTAAGCCGATCATTCTGTTTATCGACGAAGCCCACACCCTGATCGGCGCCGGTGGCAACGCCGGCGGTTCCGACGCG GCCAACCTGCTCAAGCCAGCCCTGGCCCGTGGCGAGCTGCGCACCATCGCCGCCACCACCTGGGCCGAGTACAAGAAGTACTTCGAGAAAGACCCGGCCC TGGCCCGTCGCTTCCAGCCGGTGCAGTTGCACGAGCCGACCGTCAGCGAGGCGGTGACCATCCTGCGTGGCCTGGCCCAGGTCTACGAGAAGAGCCACGG TATCTACCTGCGCGACGACGCAGTGGTGGCCGCGGCCGAACTGTCGGCCCGCTACCTGGCCGGCCGCCAGCTGCCGGACAAGGCGGTGGACGTACTCGAC ACCGCCTGTGCCCGGGTGCGCATCAGCCTGGCGGCGGCGCCGGAGAGCCTGGAGCGCCTGCGTGGCGAGCTGGCCGAAGGCGGCCGTCAGCGTCAGGCGC TGCGCCGCGACGCCGAAGCCGGCCTGGCGATCGACGAGGAAGCCCTGGACGCGCTGGAGGCCCGCCTGGCCGAAGCCGAGGCCGAGCAACAAGCCCTGGA AACCCTGTGGAGCGAACAGCGCACCCTGGCCGAGCGCCTGCTCGAACTGCGCCAGCAACTGGCCAAGGCCCGCGAGGCCGCGGCGGTCGAGCCGACCGTC AGCGTTGAAGAAGATGCCGAAGGCACGGTGATCGAGACCCTCGCCGCCGAAGTGGAAGAGGGGCAGAGCGTCGAGGCACTGGAAGCCGCCCTCAACGAAA CCCATCGCGCCCTGAGCGATGCCCAGAGCCAGGAGCGCCTGGTCAGCTTCGAAGTCTGCCCGCGCCTGGTGGCCGAGGTGATCAGTGCCTGGACCGGCGT GCCGCTGACGCAACTGGCCCGCGAGCACAACGCCAAGGTCGCGAGTTTCGCCACCGACCTGCGCGCGCGCATTCGTGGTCAGGAGCAGGCGGTGCACGCC CTGGATCGTTCGATGCGCGCCACCGCCGCTGGCCTGAACAAGCCGGACGCGCCGGTGGGCGTGTTCCTGCTGGTGGGCCCGAGCGGCGTCGGCAAGACCG AAACCGCCCTGGCCCTGGCCGACCTGCTGTACGGCGGCGACCGCTTTATCACCACCATCAACATGTCCGAGTTCCAGGAGAAGCACACCGTGTCGCGCCT GATCGGCGCGCCTCCAGGCTACGTCGGCTACGGCGAAGGCGGCATGCTCACCGAGGCGGTGCGGCAGAAACCCTATTCGGTGATTCTGCTCGACGAGGTC GAGAAAGCCGACCCGGACGTGCTCAACCTGTTCTATCAGATCTTCGATAAAGGCGTGGCCAACGACGGCGAAGGGCGCGAGATCGATTTTCGCAACACCC TGATCCTGATGACCTCGAACCTGGCCAGCGACCGCATCAGTGCGCTGTGCGAGAACGGCGAGCGGCCGAGCGCCGAGACCCTGGAAGAGACCATCCGCCC GGTGCTCAGCAAGCACTTCAAGCCGGCGCTGCTGGCGCGCATGCGTGTGGTGCCGTACTACCCGGTGGGCGGCCCGGTGCTGCGCGAACTGATCGAAATC AAGCTGGGCCGTTTAGGTGAACGCCTGAACCGTCGCCAGCTGGATTTCACTCACTGCCAGAACCTGGTCGACCATCTGGCCGAGCGCTGCACCCAGAGCG AAAGCGGCGCGCGCCTGATCGATCATTTGCTCGACCTGCACGTACTGCCGCTGGTGGCCGACCGCCTGCTGGACGCCATGGCCACCGGCGAGAACCTCAA GCGCGTGCACGCGACGCTCGACAGCAGCGGCGGCGTGACCTGCGAGTTCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTGGGTGTGATGTTCACTCGTGTACCGCAACCGCTGATCTACGCCGAGGCGCTGCTGGCGCAGTTCGCCAGCCTGTCGCGGGCGGCCGACGGTGGCGCG CTGCTGGGCGATTTCGTGCGCGGCGTGGCCGGGCTCAGCGGTTGCGAGCTGAGCCAGCTGTACCTGCTCGATGCCACTCATACCCGGCTCGGCCTCAGCG CCGAATGCCTGGGCGGCATCCTGCAACCGCGGGAAGCGGCGAGCCTGCCGGCGGACTACAACGGTGAGCAGTTGCTGCAGTTCGCCCTGTGCCAGAACCG CGTGGTGAGCCTGGTGGGGCTGAGCGGCAGCCTGCACGAAACCAGCTTCCTGCCGGCCCGGGACACGCCCTGGCAGTCGCTGTTGTGCGTGCCGCTGGTG AACACGCAAAAGGCTGTCGAGGGCCTGCTGCTGTGCGCCAGTCGCGAACATGTCGACCTGCAGGGCTTCGCCGATTCCATGGGCCAACTGGGCTCGTTCG
|
|
| Amino Acid Sequence |
>ATPase AAA
MINVDLQQLIQALDAETRRDLESSAERCVARGGSKILVEDLLLGLLERPQGLLARALQDAEVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVA NLELGQSQVEQAALILALLRNPMRYAGSRYQPLLAKLNIERLKDFALSQKEEPASGKPAAPGESLLQRFTHNLTQQAREGKLDPVLCRDGAIRQMVDILA RRRKNNPIVVGEAGVGKTAVVEGLASRIAAGEVPQVLKGVELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDA ANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVAAAELSARYLAGRQLPDKAVDVLD TACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLAIDEEALDALEARLAEAEAEQQALETLWSEQRTLAERLLELRQQLAKAREAAAVEPTV SVEEDAEGTVIETLAAEVEEGQSVEALEAALNETHRALSDAQSQERLVSFEVCPRLVAEVISAWTGVPLTQLAREHNAKVASFATDLRARIRGQEQAVHA LDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVILLDEV EKADPDVLNLFYQIFDKGVANDGEGREIDFRNTLILMTSNLASDRISALCENGERPSAETLEETIRPVLSKHFKPALLARMRVVPYYPVGGPVLRELIEI KLGRLGERLNRRQLDFTHCQNLVDHLAERCTQSESGARLIDHLLDLHVLPLVADRLLDAMATGENLKRVHATLDSSGGVTCEFA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|