Pseudomonas fluorescens SS101, PflSS101_3009 (tssF2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGTATCGGGTCAACGTCACGGTACGCCCGCATTTCAAATACATGGGGGCAGACTTCACGTTGTCCCTGGTCGGCAAGCTCGATAAAGAATGAGCAGA GGCCAGGGCATGCTTGAGCACAACAGCCTTTTCGAACGCCTTGAGCGTGGTGCGTCTAACCCGGGCGCCGCCGTGGCGTCCATCGCCGCACATTTGGGGA AAATGCTCAGCACTCGTGCGGGCAGTGTCCGGACGCTGCCTGATTATGGCTTGCCTGACCTCAATGACATGCGGCTCAGCTTGCATGAATCCTTGAGTCA GTCGCGCCTGCATATCGAACGGTTTATCCAGGCCTATGAGCCGCGGCTGACGAATGTACGTGTCAGGCTGCTGCCGGTTGTGCGTGACTCCTTGTCCCTG GCATTCGCCATTGAGGCTGAGCGGATGATTGAGGGTGCCCTGCATCCTGTGGTGTTCCACGCGCGCCTTATCGATACCGGGCGGGTTGAGGTCTGTGCCG
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| DNA Sequence for Gene |
>PflSS101_3009
|tssF2
ATGACGCTTAACCGTTATTTTCAAAGTGAACTCAGCGCGCTGCGCCAACTGGGGCGGCGTTTTTCCGAACGTAATCCCGCCCTGGCGCCGTTTCTTGGCG AAGCCGGCCAGGACCCGGATGTCGAGCGCTTGCTGGAGGGCTTCGCATTCCTGACCGGGCGCCTGCGCCAGAAGCTGGATGACGAACTGCCGGAGTTGAC GCACTCATTGATGCACCTGCTCTGGCCCCATTACATGCGGCCGATACCGGCCTTCAGCATCCTGCAATTCGACCCGTTGAAACGTGCCGGCCCCAGCGTT CGGGTGGCTCGGGACACTGCTGTGCAAAGCGCCCCCATCCAAGGAGAGCGTTGCCGGTTCCGCACCTGCTATGCCACCGACGTCATGCCGTTGCAGCTCA ACGGCCTGGAATACAGATGCCAGGGCGAAGGGGCCTGGTTGGACTTGCGCCTGCGCATGAGTGTCGACGGCAGCTTCAGTGAGTTGATATTCGATTCGCT GCGACTGCACCTGGCCGGTGACCATTACATCAGTCAGGGACTGTATCTGAGCCTATTGCGGCACCTGGAGGGCATCAGCCTGCAGCTCGTGGATCACGAT GGTCTGCCGATCAACGCCGGCGATGGTCAACCCGTGACGCTGCGGCTCAATGCCAACCACGTCCGGCCGGTGGGGTTTGCCCCGGAGCAGGCGTTGATTC CTTATCCGCAGAACACCCTGGAGGGTTATCGGCACCTGCAGGAGTACTTCGCGTTTCCCGAGAAGTACCTGTTTGTCGATGTCGAAGGCCTGGACGTGTT GCACACGTTGTCTCACGAGTTGCTCCGGCAGGCGCACGGCCTGGTGATGCGTTTCGAACTTCGCACCCAGGGCCGTGAGCCCCTGCGTCCTACCCTGGAT AACGTGAAGCTGTATTGCACGCCCATCGTCAACCTGTTTACCCAGGATGCCGTTCCCATTCGCCTGGACGGTAAACAGGACGAGTACCTCCTGGTGCCTG GGGAATACACGCCGGGCAATGCCAGCGTGTTTTCCGTGGATAAGGTCACCGGCTGGCGCCCCGGTGGTTTGGGCTATCAAACCTACGTGCCGTTCGAGTC GTTTGAACATGATTGCAACACTGAGCCTTTGGCGGCACCGCCCAGCTACAGCATTCGCCAACGTTCGTCGGTCCAACATGCCGGGCTCGACACCTGGATG GGGTTCGGCAATCGCCGCGAACAGGGCCAGGAAACCCTGTCGGTTGAACTGACCTGCACCAATTGCAATCTGCCACGGCAATTACGTGCAGGCGACATCA ACCAGCCCGGCGAACAGACACCGGAGTCGTTGACGTTCCGCAATATCACCGCGCCAACGGCGAGCTACGCGCCGCCCCTGGACCAGAATTTTCTGTGGAA GCTCATCAGCAACATGTCGCTCAACTATTTGTCGTTGACCGATATCAACGCCTTGAGAGTGATTCTCGAAACCTACGACCTGCCGCGTTATTACGATCGC CAGGCGCTGAAGGTCAGCCAGAAAAGACTGGGGGCGTTGCGCGCTATCTGTCATGAGGCGATTGATCGCCTGCATCGTGGGTTGCCCGTGCGAGGTGTGC GGGTCGATCTGACCGTCGATTCCCAGGGCTTTGTCGGTCAGGGCGACTTGTTTGTATTCGCTTCGGTCCTCAATCAGTTCTTTGCGCTTTATGCCAGCCT CAATTCCCATCACGAGTTGCGTGTCATCAGCACACAAGGAGACGTGTATCTATGGCCATCCCGGATCGGGCAGCAACCCCTGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCAACTTTGCCGGGGTATCCGTGAATACACGCTGTTCCAGGCGGTTTTGCAGGTCACCGAGCGATTGCGTGAGGCTCATCCGCTGCTGGATGAGGACGC GCTGTACGACCAGTTGGAGTTCCAGGCCAACCCTGGCTTGGGGTTTGCCGCGCACGATATTGACCGAGTGGAGTTCTTTATGGAACACGGGCATTTGCGC GCACGCCTGCGTCTCAATGTGCTGGGGTTATTTGGCGCCGGGTCCCCACTGCCTGCGTTTTATGGTGAGCAGGCATTTGCCGAACAGCCGGGTGGCAACC CGACTCGAGACTTCCTCGATCTGTTCCATCATCGCCTGCACCGGCTGATGCTCCCGATCTGGCGCAAATACCGCTATCGGGCGTGTTTCCGGGCAGGCGC CAATGACGGTTTTTCCGAGCAGATGTTTGCCCTGACGGGGCTCGGTGGTGCCGCGATCCGTGGCGCTTGCCAGCTCGATTGCAAGCGCTTGCTGCCCTAC
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| Amino Acid Sequence |
>type VI secretion protein
MTLNRYFQSELSALRQLGRRFSERNPALAPFLGEAGQDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPHYMRPIPAFSILQFDPLKRAGPSV RVARDTAVQSAPIQGERCRFRTCYATDVMPLQLNGLEYRCQGEGAWLDLRLRMSVDGSFSELIFDSLRLHLAGDHYISQGLYLSLLRHLEGISLQLVDHD GLPINAGDGQPVTLRLNANHVRPVGFAPEQALIPYPQNTLEGYRHLQEYFAFPEKYLFVDVEGLDVLHTLSHELLRQAHGLVMRFELRTQGREPLRPTLD NVKLYCTPIVNLFTQDAVPIRLDGKQDEYLLVPGEYTPGNASVFSVDKVTGWRPGGLGYQTYVPFESFEHDCNTEPLAAPPSYSIRQRSSVQHAGLDTWM GFGNRREQGQETLSVELTCTNCNLPRQLRAGDINQPGEQTPESLTFRNITAPTASYAPPLDQNFLWKLISNMSLNYLSLTDINALRVILETYDLPRYYDR QALKVSQKRLGALRAICHEAIDRLHRGLPVRGVRVDLTVDSQGFVGQGDLFVFASVLNQFFALYASLNSHHELRVISTQGDVYLWPSRIGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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