Pseudomonas fluorescens Q2-87, PflQ2_1358

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens Q2-87 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATTGGCAATGGTTTGTCCGCCAACCTCGCGGCTGGGCCTGGCTCGAGGGCCAGTTCTCGCGCATGGCGAACCTGGGCGACGTCGGTGCGCAAAGTTTTTA CGGGCACATCCTGACGTTTCGTGGCCAGGGGCTGGGCGCCCGCGAAGAAGGGGTTCGCCTGCTGCGGCTGGCGGCACTGGCGGGCGACGGCAAGGCCGCT TACCAGGTCGGTGTGATCAGCCTGGCCGGTACGGCCAGCAAGGCGCCGGATCCGGTCGAAGCGGCACGCTGGTGGACCTTGGCAGCGAAGGCCGGGCATC CGCTGGCTGAAATCAAGCTCAAGTCGCTCGATGCCCGTAACCCGTAGGGCAATTAGCGAATCGCCCTACGCCCGCTGCTTCTTTCGCTGACTTTTTTCCT CATCGATCCCCGGCACAGTCTCGCGCTTCCTGAGCGCTGCGAGACGTCTGCCCATGTCCGACCGTTTTTTCCTGCTGGCCCTTGATCGAGCCGTGTCCCA
DNA Sequence for Gene
>PflQ2_1358
ATGGACCCGATAAGCCGTATCGAGCAGGAACTCGACAGTTTCCCAGGCACCTTGTCGATCTACCGCGAGCAGCTCGAACGCTGGTATAGCCAGGCCGCGG ACCGGGCCAGCCATCTAGTCGACTTGCCCTCGCTGATGGGCATGGAACGGTTGATCCGTTTCGGCGACAGCAGCACCGCCGTCAGCACCGGTGATGATGA TTTCCTCTCTACCGTCGTTCGCTGCCCGCAAGGCGGGGTGATGACCATCGAGAGCAAATTCGAGTCGGTGTATGACATTCCGCTGGGCGACATCGTGGTG GATGTCGTCGCGGTGGACAGCGGCGAGATCACGCCAGTCAAGCTCGATGCCCAGGGCATCGGGACTTTCGAGGGGGAAGCGGGCCGGTTCTATCAGGTTC ATGTCCAGGGCGAAGTTTCATCCGCACAAATCAACAGCCTGTTTTCTTCCTACGATGGCCTGAGCATTGAGCTGACGGACTGGTTACGTGGTGAGTGGCA GGGCTTCAAGCCGCAGTGGGCGCAGCAATCATTAGCGACCTCGGCGGCAGCGGTGGGCAACGGGCTGCTCGCCGGCAGTTGGGCAGCGATCGAAGGGGTG TGGGACAGCATTGGCCTGCTGTCGGACATCCTCAAGGACCCTGGTCAATTTATTGAGCGTTTGGGCGCCAGCGCTGCTCAGTTGCAAAAGCTCGCGCTGG ACACGCCACTGGTCATGGCGAAGCTGCAATTGCTGGCCAGTGACGAAGCCGCGTTATGCCTGCTGGTGCGCACCGCCAGTCTCTGGCTGGACATGTTGCC GCCTAGCGAGGTGGCCGGCGAAGCGGCCGAAGCCTTATCGACTGTGGCGGTGCAGCTGCTGATCGATCTGTTGATCGGTGTGGTCTTGACCTTCACCGGG GCGGCTACCGGCGTGGCGTATTTGTCGATGCGCTTGGGGCATGTGGGCGTGCGGCTGCTGAACGCCATGCAGCGTTTTATCAGCGCGATGTTCGCGGTGG TCAACGGCTTCATGACCTATGTGGATCGCTACAAGACCGTAGCGGCCCGGGGGATCGCGGCCGGAGTTAAAAAGGGGCGTATGCAGCTTCGCTGGGACGC GCAGCGCAATACCACACTGAAAAAAGACGAATCCTACGTCGACGCGCCCAAACAATCGAAAAACCCCAACGGCGACAGCGCCGACACCGCAGCCCAGACC CAAACCAGCGGTTGCCCGGTGTCGATGGTCACCGGCGAAGAACTGCTGACCCTCGAGGACGGCACGCTCGATGGTCGGCTGCCGTTTGTCTTCACCCGGC TGTACCGCACCAGCGCCGTGGACCTGGACGTTGGGCTCGGACGCGGCTGGAGCCATGCCCTGGCGCATCGCTTGGAGCTGGAGGACGAGCAGGTCATCTG GGTCGACCAGGAAAACCGCCGCACCCCGTTTCCACTGCCCGATACCCGGCGTCCGGCGATCCACAACAGCCTGGCCCGCGCCGCGATTTACTTAGGGACC GAGCCGGACGAACTGATCATCGCCCAGCCCGGCGAGCAGGCACCTTTCCTACATTTTCGCGACGGTCGTCTGACCGCCCTCAGTGATCGCTACGACAACC GCCTGACGATCCAGCGCAACCTCCACGGTGACATCAGCCGCCTCGACAACGGTGCCGGACGCGCCCTGCGGCTGCGTTACGAGCAGCGTCAGCTGATCGC CGTGGATTATCAATCCTTCCACCCAGCCGCCAGCCTGGATGAAGCCTGGCGTACCGAACAGACCCTGGCGTCCTACCGCTACGACGGACGTTCCCGACTG ATCGAAGCGACCAACGCCGTCGGTGAAAGCGAGCGCTACGACTACGACGACCAGCACGTCATCCTCCAGCGACAACTGGCCGGCGGGGCCAGCTTCTACT GGGAATGGCAGGGCGCCGGGCGGGCGGCTCGTTGCGTGCGGCACTGGGCCTCGTTCGCGCAGATGGACAGCCGCTACACCTGGGGCGAGGACGGTCGTGT CACGGTCCAGCACCTCGACGGCAGCCAGCAAGTGTATGTCCACGACGACCGGGCGCGGCTGGTGCGCCAGGTCGAACCCGATGGCGGTGAGCACCTCAAG GCGTACGACGAACAGGGCCGGTTGATTGCCGAGCAGGATCCGCTGGGCGCCGTCACCGAATACCGCTACGACGAAGTCGGGCGACTGGTGGCGCTGATTC CGCCCATTGATGAGCCCACGTCCTACGAATACCGCAAGGGTTTCCTGCACAGCCGTTCACGCGGCAACGCCGTGTGGACCTACCGGCGCAACGCCCAGGG CGATGTGACCGCAACCGTCGATCCTGATGGGCAACGTACCGCTTATGGCTACGACGCCCATGGGCAATTGCTGTTTATCCGTTACCCCGACGGCGGCGAA CACCGCTTCATCAGGAATCGCCTGGGCCAGCTGACGGAAGAAATCCTGCCCGATGGCGGACGCTGGTGTTTTTCCTACGACGCCCTGGGACGGCTGCTGA CCCGCCAGGACGAACACGGCGCCCTTATCCATTACCGATGGGACGCGGTAGGGCGAATGCTTCAGGTGACCTTGCCGACCGGCGCGACCCGGGCCTGGAG CTACAACGCCTACGGCAAGGTCACCAGCGAGCGCGACGAACTGGGGCGCGTCACCCGTTACGAGTACGCCGACGACCTGCACCTGATCAGCCGCCGCCTC AACCCCGACGGCACTGAGCTGAAGTATCGCTACGACTCGGCAAGGCTGTTGCTGACCGAGATCGAAAACGAATCCGGCGAAAAATACCGGCTGGACTACA CGCCCAACGGTTTGATCCGACAGCAGATCGGCTTCGACGGCCAACGCACCGCCTACGCCTATGACCTCAACGGCCATTTGCTGGAAAAAACCGAGCACGG CGAAGACGGTTCCCTGCGCGCCACGCACTACCAGCGCGACGCAACCGGGCGCCTGCTGCTCAAGACCCTGCCCGACGGCCAGGCGATCGAGTACCGCTAC GACCGGCTCGGCCGGCTGGTGCATGTCGATGACGGCACGGACCATCCGCTGGCCTTCGAGTACGACGCCCAGGACCGACTGATCACCGAGCACCAGGGCT GGGGCACCCTGCGCTATGGCTACGACGCCTGCGGACGGCTCAACCACCTGCGCCTGCCGGACCACAGCAAGCTCGACTATCACCACGCCCGAGGCGGTGC GCTGACTGCCATCGACCTGAACGGCGCACGGCTCACCGAGCACCAGATGCGCGGCGGTCGCGAACTGGAGCGCCAGCAGGGCCTGGTGCTCAGCCGGTAC GACTACGACGAACAAGGCCGGCTCAAGGCCCAAACGGTGTGGCAGCACCAGGAGCAATTGTTCTGGCGCGATTATGCCTACAGCGCCAAGGGCAACCTTG AAACCCTTTCCGACAACCGCAACCGCCGCAATTACCGGTACGACCCGCTGGATCGCCTGATCCGCATCGACTATTCCCACACCGAGCCGCCGGAACACTT CGCCCACGACCCGGCCGGCAACCTGCTGATACAGGATCGCCCCGGCCCGACCACCCTCAAGGGCAACCGTCTGTTGAGGGAGGGCGACCGCCACTACGAC TACGACGCCTACGGCAATCTGGTCCGCGAGCGCCGCGGCACCGCCCCCAGCCTCGTCACCGAATACCGCTACGACAGCCAGCACCGGCTGATCGGCGTCA CCACGGCGGACGGTCGCGAAACGTCCTACCGCTACGACGCCTTTGGCCGACGCATCAGCAAGACCGTGGACGACCTGACCACCGAATTTTTCTGGCAGGG CGACCAAGTCGTCGCCGAAAGCAGCCCATGCCACCACCGCAGCTACCTCTACGAACCCGGCACCTTCCGCCCGCTGGCCATGCTCGACGGCAAAGGCCTC AACGCCTGCCCGTTCTACTACCACCTCGACCACCTGGGTACGCCCCAGGAACTGACCAACTATGGTGGCCAGGTCGTCTGGTCGGCGCGCTACAACGGCT ATGGAAAAACCACCGAACTGACTCATGGCGGCGGCGAACAACTCGAACAACCGCTGCGCTTCCAAGGCCAATACCTCGACCCGGAAAGCGGCCTGCACTA CAACCGGCACCGCTACTACAATCCCGAGACCGGCCGTTACTTGACGCCTGACCCGAGCAAGTTGGCGGGTGGGCTTAACGGGTATCGGTACACGGTGAAC CCGACGGGGTGGGTGGATCCGTTGGGGTTGGTGGACTGCCCGGGGAAGGGCGGGTGTAAGCCGGCGGTTGGGGAGCAGGATCCGGCGGGTAAGGTTGGGG TGGATGAGGGGGAGCCGCGGCTTCCTAAACCAACCGCTGCTGAATTGGCCGAAAAAGAGGTCAGGCGTTTAGACAGGGAACAAGGTATGCACATGGTCGG TAAGCATAGCCCTGCGGTCCCTGATCAAGCGTGGATGCGACGAGCAATTGATGGAACAGACCCCATTACCGGCAAAACGCCTAAGAATAAACTAGGAAAT CCAAGCTCAAGATTTTCCAGTTGGGAAATGCAGCTCAAAGCTTATAACCTTGCAGTTAATCGTAAGAAAAGTGGTCTCCCGCCATTTACGGGACGAGATC AGAGAAATAATCATATTGTCAGAATGGATCTGCCTGGGGCAGGTGAGGGTTACATTCCAAATAAGAAAGATCCAACGAAGCCAACGCTTGTAGCTATGGA TCGGTTTGAAATGAAAATCGATCCGGATACAGAAATTCCATTTACGTTGTTTCCAATTAAATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTGTGAAGATGTTTATTGATCCTGGCACAGAGCTTCCATATGTACCTACACCATCCTATTTTTTAGGTTGCTTCGATATATATGATAGGGAAGAAACATT GGGTGAGGAGCTGGAAAAATTTGACCCAAACAATGCAGCTGATAGGGAGGTGCTGATTACTAATTATGCCTTGAAAGGAAAACGATCCTATCGAGAAAAG TTCTTGCTTTATAAATGCTTAGAGGGCGCGATTTTGGATAAAAGTTATGATTTTCAGGCTCTGCTTGAGCATGACTCTCAGGAGTGCTCATCGCTCCCCA ACGGATGGGACACGATGGAGAATCCACGATTATTTTTTGAAGATATATATAAATTTGCAAGTGAGGTATGGGCAGATGACCTTCATAAGGCTGAAGCTGA GGACCAATCTAATTGGTACTATATATAGACGCCCATTTCGCGTAAAAAAATCTTACCATTTCCCATTACTTAACTAGCGAGGGTGCCAACGGAAAGCCCA
Amino Acid Sequence
>type IV secretion protein Rhs
MDPISRIEQELDSFPGTLSIYREQLERWYSQAADRASHLVDLPSLMGMERLIRFGDSSTAVSTGDDDFLSTVVRCPQGGVMTIESKFESVYDIPLGDIVV DVVAVDSGEITPVKLDAQGIGTFEGEAGRFYQVHVQGEVSSAQINSLFSSYDGLSIELTDWLRGEWQGFKPQWAQQSLATSAAAVGNGLLAGSWAAIEGV WDSIGLLSDILKDPGQFIERLGASAAQLQKLALDTPLVMAKLQLLASDEAALCLLVRTASLWLDMLPPSEVAGEAAEALSTVAVQLLIDLLIGVVLTFTG AATGVAYLSMRLGHVGVRLLNAMQRFISAMFAVVNGFMTYVDRYKTVAARGIAAGVKKGRMQLRWDAQRNTTLKKDESYVDAPKQSKNPNGDSADTAAQT QTSGCPVSMVTGEELLTLEDGTLDGRLPFVFTRLYRTSAVDLDVGLGRGWSHALAHRLELEDEQVIWVDQENRRTPFPLPDTRRPAIHNSLARAAIYLGT EPDELIIAQPGEQAPFLHFRDGRLTALSDRYDNRLTIQRNLHGDISRLDNGAGRALRLRYEQRQLIAVDYQSFHPAASLDEAWRTEQTLASYRYDGRSRL IEATNAVGESERYDYDDQHVILQRQLAGGASFYWEWQGAGRAARCVRHWASFAQMDSRYTWGEDGRVTVQHLDGSQQVYVHDDRARLVRQVEPDGGEHLK AYDEQGRLIAEQDPLGAVTEYRYDEVGRLVALIPPIDEPTSYEYRKGFLHSRSRGNAVWTYRRNAQGDVTATVDPDGQRTAYGYDAHGQLLFIRYPDGGE HRFIRNRLGQLTEEILPDGGRWCFSYDALGRLLTRQDEHGALIHYRWDAVGRMLQVTLPTGATRAWSYNAYGKVTSERDELGRVTRYEYADDLHLISRRL NPDGTELKYRYDSARLLLTEIENESGEKYRLDYTPNGLIRQQIGFDGQRTAYAYDLNGHLLEKTEHGEDGSLRATHYQRDATGRLLLKTLPDGQAIEYRY DRLGRLVHVDDGTDHPLAFEYDAQDRLITEHQGWGTLRYGYDACGRLNHLRLPDHSKLDYHHARGGALTAIDLNGARLTEHQMRGGRELERQQGLVLSRY DYDEQGRLKAQTVWQHQEQLFWRDYAYSAKGNLETLSDNRNRRNYRYDPLDRLIRIDYSHTEPPEHFAHDPAGNLLIQDRPGPTTLKGNRLLREGDRHYD YDAYGNLVRERRGTAPSLVTEYRYDSQHRLIGVTTADGRETSYRYDAFGRRISKTVDDLTTEFFWQGDQVVAESSPCHHRSYLYEPGTFRPLAMLDGKGL NACPFYYHLDHLGTPQELTNYGGQVVWSARYNGYGKTTELTHGGGEQLEQPLRFQGQYLDPESGLHYNRHRYYNPETGRYLTPDPSKLAGGLNGYRYTVN PTGWVDPLGLVDCPGKGGCKPAVGEQDPAGKVGVDEGEPRLPKPTAAELAEKEVRRLDREQGMHMVGKHSPAVPDQAWMRRAIDGTDPITGKTPKNKLGN PSSRFSSWEMQLKAYNLAVNRKKSGLPPFTGRDQRNNHIVRMDLPGAGEGYIPNKKDPTKPTLVAMDRFEMKIDPDTEIPFTLFPIK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site