Pseudomonas synxantha BG33R, PseBG33_5519 (tssK1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTACCGCGCTGCTGCTGACCGCGTGTGCAAACGATGCGGCCAAACCCGAAGCGGCTGCCGACACGCAAGCCAACAGCGCCGCCGTCGAGTTGCATTTCCA CGCGATCGCCGGGCTTAACCCCGGCGCCAATGGCCAGGCTGCGCCGGTGCGGGTGCGTATTTTCGAACTGAAAAACGCCGCGACCTTTTCCCGCTCCGAT TACTTCGCCCTGGCTGACCGTGCGCAATCCACCCTCGGCCTCGACCTGCTGGACCAGGATGAAGTGGTGGTGCAACCCGGCCAGCAACTGAGCATTCAGC GTGACCTCAACCCGGCCACGCGCCAGATCGGCGTGCTGGTGGGCTATCGCGAATTGGACCGCGCGCAATGGCGCGCCGTGATCAACGTAGCGCCGCGCCA ATCCAGCGAATACCAGATCAGCCTCGATGTGCGTGCCGTGCGCGCCGACGTCGTGGTTTCCCCCTCCAGCCCAGCCCAATAACAAGCAATCGGAGCCCCC
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| DNA Sequence for Gene |
>PseBG33_5519
|tssK1
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATCGCAACGCAGCACTTCCAGCAGCATGACCGTTACCTGGAAAACCTGATCGACGCGC GCAGCCGTCCGTTGTCGGCAGGGGCCTGGGGTTTTTCCGAGTTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGCGATCGTATCGGCCCGCGG CCTGTTGCCCGATGGCACTCCCTTCAATATCCCCCAGGATGACCTGGCGCCGAGTCCGTTGAGTATCGACGACAACCTGCGCGACGGCTTGGTGTACCTG GCCCTGCCGCTCAAGCGTGCCGGTGCGCGTGACACGGTTGAGGAAGGCGAAGCCCTGGAAGCTGCGCGTTATGTCAGCCAGGTGCGTGAAGTGCGTGACG ACAACGCGCCGTTCGAAAACCGCGCCCCGGTGGCCGTGGGATCGCGGGCATTGCGCCTGCTGACGGCGCAGGACGGCATCAGCGACTATGCCGCGATTGG CCTGGTACGCATCAAGGAAAAACGCGCCGACCGTGCGCTGGTGCTCGACGACACCTACATCCCGCCGGTGCTGAATGTGACCGCAAGCAAACCGCTGACT GCGTTTCGTAGTGAACTGCTCGGCCTGCTGCACCAGCGTGGCGAAGCCCTGGCGGGGCGCGTGGTGGCCTCCGGCGCTGGCGGCGCTTCGGAGATTGCCG ACTTCATGCTGCTGCAGCTGGTCAATCGCGCCCAGCCGCTGATCCAGCATTTGAGCCAGTTGAGCCCGCTGCACCCGGAGCGCTTCTTCAGCGAACTGGT GAGCCTGGCCGGTGAGTTTTCGACCTTCTCCACTTCAGGTCGCCGCCCTCAGGAATACCCGCAATACCAGCACGATGACCTGGCGCTGAGCTTCACTCCG GTGATGGCGGCCCTGCGTGAAGCGCTGTCGATGCTGATCGACAGCAAGGCCACGCCGATCCCGATTGTGGAGAAGGCCTACGGTATCCACGTGGCGATGC TGGCCGACAAAACCCTGCTCGACAACGCCAGTTTCATCCTCGTGGTGCGTGCCGATGTGCCCGGCGAAACCCTGCGCGCACGCTTCGGCCAGCAGAGCAA AGTCGGTTCGGTGGAGCACATTCGCGACATGGTCAACCTGCAACTGCCAGGCATTGGCTTGCTGCCGTTACCGGTGGCGCCGCGCCAATTGCCGTACCAC GCCGGTAGTACCTACTACGAGCTGGACCGAGGCAGCGAGCACTGGCAGCAGTTGAGCAATTCCGGCGGCTTTGCCTTCCACATCGCCGGGCAGTTCCCGG GCTTGAACCTGGCCTTCTGGGCGATCCGAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCGATGCATCCCAATGACGATGACCGCACCCAGTTCATGCCGCGCCCGGGTGGCCGAGCGCCGGAGCCTGCACGCGCAGAACCGGCGCCGCTGTCGA TGCCGGCTGCGCCGATCCTCACTGGCAAGAGCCACGGCCTGAACCCGCTGGAAAGCGCCGCCGGCCCTTTACTGGCGTTGCTGACGCGGCTGCGCAACAC CATCGCCCACCCGGCGCCAGCCAGCCTGCGGGCGCAGTTGTTGGCCTATCTGCGCCAGTTCGAAGAACGCGCCGAAGCGGCTGGTGTGGCGCGCAACGAA GTGCTGCTGGCCCGTTACGCGCTGTGCACCGCCCTGGATGAAGCGGTGTTGAGCACGCCGTGGGGCAGCACCAGTGATTGGGGCAAGCAAAGCCTGCTGA TCACCGTGCACAACGAAGCCTGGGGCGGTGAAAAGGTCTTCCAGTTGCTCGACCACTGCCTGCAAAGCCCACGGGAACGCCTGTACCTGTTGGAGCTGTT
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| Amino Acid Sequence |
>type VI secretion protein
MSWNNRVVWSEGMFIATQHFQQHDRYLENLIDARSRPLSAGAWGFSELLIDQGLLAQGKLAIVSARGLLPDGTPFNIPQDDLAPSPLSIDDNLRDGLVYL ALPLKRAGARDTVEEGEALEAARYVSQVREVRDDNAPFENRAPVAVGSRALRLLTAQDGISDYAAIGLVRIKEKRADRALVLDDTYIPPVLNVTASKPLT AFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNRAQPLIQHLSQLSPLHPERFFSELVSLAGEFSTFSTSGRRPQEYPQYQHDDLALSFTP VMAALREALSMLIDSKATPIPIVEKAYGIHVAMLADKTLLDNASFILVVRADVPGETLRARFGQQSKVGSVEHIRDMVNLQLPGIGLLPLPVAPRQLPYH AGSTYYELDRGSEHWQQLSNSGGFAFHIAGQFPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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