Pseudomonas synxantha BG33R, PseBG33_3875 (pfiT/atuR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCATCGCCGAGCAGCACCGCGATTTTCAGCGCAATGCCGGCTTGGTCGCAGGCCGCTTGCAGGGCGGCGGCGCAGGCCTGGGGGTTGATGCCGCCGGCAT TGCTGATCACGCGGATGCCCTGGCGTTGGAGATCCGCCAGCAAGGGCGTGAGGACCTCGACAAAGTCCGTGGCGTAACCGGCTTTGGGGTCTTTCATGCG TGCTCCGGCGAGAATCGACATGGTGACTTCCGCCAGGTAGTCGAACACCAGGTAATCCAGGGCGCCGCCGTGCACTAATTGAGCGGCCGCCGTGCAGGTG TCGCCCCAGAAGGCGCTGGCGCAGCCGATACGAACCGTTTTGCTCATGAGAAATCCGTCCTCCAGGGGCTGGTGTCGAGACTACCAAGCAAGCGCTTGGT TTGTAAACTGTGCGCACAAGTTTTACCCAAGCGCTTGCTTGGGTGGCGGCCACGGCCTAAATTGCCGCCCAAGATGTCAGCACAAGTGAAGGAGAGCAGC
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| DNA Sequence for Gene |
>PseBG33_3875
|pfiT/atuR
ATGGATGAGCACAAAGCCCTGGGGGTGATGCGCGCCATGGTCGCCGGTGGCCGATTGACCGACCCCGAGAGCGCCCGGGGCAAATTGCTGCAAACCGCGG CTCACCTGTTTCGCAACAAGGGTTTTGAGCGCACTACCGTGCGTGACCTTGCCAGCGCCGTGGGCATACAGTCGGGCAGCATCTTTCATCATTTCAAGAG CAAGGACGAGATTCTGCGGGCGGTGATGGAAGAAACCATCCACTACAACACCGCAATGATGCGCGCCGCGCTGGAAGAGGCGAGCACTGTACGCGAGCGT GTGCTGGCGCTGATTCGCTGCGAGTTGCAGTCGATCATGGGCGGCAGCGGCGAGGCCATGGCGGTGCTGGTCTACGAATGGCGTTCGCTGTCGGCCGAGG GCCAGGCCCAGGTGCTGGCCTTGCGCGACGTTTATGAAGATATCTGGTTGCAGGTATTGGGTGAGGCCAAGACCGCCGGGTATATCCGCGGTGACGTGTT TATTACTCGGCGTTTCCTGACGGGCGCGTTGTCCTGGACCACTACCTGGTTCCGTACCCAGGGCAGCCTGACCCTTGAAGAATTGGCCGAAGAGGCCCTG CTGATGGTGTTAAAGGCGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGCACGCTATTAATTTGAGGGCGAACGTTGTCTCCCCCGATAAAAACGCCTAGCTTAGCGCCATCAGAATATTCAACGGTGTGTGCCTCGATGTTTTC GCCATGGCGGCTGGCTGCAGGACTTGCATTATGGGCACTGGGCAGCGCCGTGTGGACGCAGGCGGGCGCTGCGCAATTGGTGAGGATCGGCGCGGCGCAC TTTCCGCCTTACACCGTACGTCCTGAACAAGGTGCCGACACCGGTTTGCTGCCGCAATTGATCGAGGCCCTGAACGCTGCGCAAACCGACTACCAGTTTG TCTTGGTACCCACATCTATTCCCCGGCGTTTCCGCGATTTCGAGCAAGGCCGGGTCGACATGGCGATTTTCGAGAATCCGTCCTGGGGCTGGCGGGATAT TGCCCATACCAGCGTCGACATGGGCCTGGAAGACGCAGAAATCTTCGTCGCCCAACGTCAGCCAGGTCGCGACGAAAGCTATTTTGCCGACCTTGCCGGC
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| Amino Acid Sequence |
>TetR family transcriptional regulator
MDEHKALGVMRAMVAGGRLTDPESARGKLLQTAAHLFRNKGFERTTVRDLASAVGIQSGSIFHHFKSKDEILRAVMEETIHYNTAMMRAALEEASTVRER VLALIRCELQSIMGGSGEAMAVLVYEWRSLSAEGQAQVLALRDVYEDIWLQVLGEAKTAGYIRGDVFITRRFLTGALSWTTTWFRTQGSLTLEELAEEAL LMVLKAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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