Pseudomonas synxantha BG33R, PseBG33_0474
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCAGCTACGCCTGGGCCGGTTTCGGCGCTGCGTTCGGCCCTGTGGTGCTGATCTCGGTGATCTGGAAAAACATGACCCGCAACGGCGCACTGGCCGGCA TCCTGGTCGGCGCGATCACCGTGATCGTGTGGAAGCACTTCGAACTGCTGGGTCTGTACGAAATCATCCCAGGCTTCATCTTCGCCAGCCTGGCGATCTA CTTCGTGAGCAAGATGGGCGCACCGACGGTTGGTATGGTCGAGCGTTTTGATGCTGCGGAAAAAGACTACAACCTCAACAAATAACTGCGCCGGGCGTTG AGCGCCTGTCCAGTTGAAACAAAAACGGCCCGCGTCCTTTGGATGGCGGGCCGTTTTTGTTTCGGCTAGTTCGGCCAGTTGTCTTCGAGGGTGGCTGGAT GAAGGTAGAGGTAGGACCTTACTGATTTGGCTGCGATACGCCCGGCCGGGCAAAAAGCTGGTGCAGAATCGGCTGCCCACCCTTCGCAGAGAAACACCGG
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| DNA Sequence for Gene |
>PseBG33_0474
ATGTTCGCTCCTGCCAACCAAAGTGTATTTACCCTGGCCCTGGATGGGGCGCCCAGTGACCTCAAGGTGTATGAGTTCAGTGGCTCCGAGGCCATCAGCC AGCCTTACCGTTTCGAACTTGAGCTGGTCAGCGAGCAGCCGGATATCGACCTGGAGAGCTTGCTGCATCGTCAGGTATACCTGGGTTTCGATGACTGCGG CCATGGGGTGCATGGCCTGGTGTACCGGGTCGCCCAGGGCGATTCCGGACGGCGCCTGACGCGCTACCAGCTCAGCCTGGCGCCGCACCTGGCGTATCTG GCGCATAGCAGTCATCAGCGGATTTTCCAGCATCAGACGGTGCCGCAGATCGTTGCGCAGGTGTTGGCGGGGCAGGGCATCCACAGTGACAGCTTTGAGT TCCGGCTGAGCGGTCAATACCCTGAACGTGAGTATTGCGTGCAATTCGGTGAGACGGATCTGGCGTTCATCCAACGCCTGTGTGCCGAAGTCGGCATTCA CTATCACTTTCAGCATTGCCCCGATGCTCATTTGCTGGTGTTTGGCGATGACCAGACGGTATTTGCCCAGGTCGATCAGCCCACGCCGTACCGGCCTGGG TCGGGCATGGTTGCCCAGGCGCCGGCGATCAAGCGTTTCACACTGCAATTGGCAACCCGCACCACGGCGGTCAATCTGCGCGATTACGATTTTTGCAAAC CGCACCTCGAGCTGCAAAGCACGGCGGCCGACGCGCAGTTGCCCAAGCTTGAGGCGCAGCAGTTCCCCGGCTATTTTTCCGACCGGGCCCATGGCAAGTA CCTCGCCCAGCGTAGCCTGGAGCGGCAGCGCAGCGACTACCGCATCGCCCAGGGGCAAAGCGACGAGCCGGCCTTGGCCGGCGGCAGGTTCCTGCAATTG AGGGAGCACCCGCGCGAGGAGTGGAATGACATATGGCTGGTCACCCAAGTCACCCACGAAGGCAAACAGCCCCAGGTGCTGGAGGAAGCGGTCACCGAGG TGGTTGGCGGGGCGTTTCGTCAGGGGTATGGCAACACCTTTGTTGCCACGCCGTGGGATGCAATCTTTCGCCCGCCCTTGCCTGAGCAGCCGCGCCCGAC CATAGCGGGCTACCAAAGCGCGGTGGTCACCGGCCCGGTCGACAGTGAAATCCATTGCGACGACTACGGCCGGGTCAAGGTGCAGTTGGCCTGGGACCGT ATCGGCGAGCACAACGACCACGCGAGTTGTTGGTTGCGTGTCGCCAGCGGCTGGGCCCATGACCGCTATGGTGTGGTGTTGATTCCCAGGGTTGGCATGG AGGTGTTGGTAGGTTTCGTCAATGGTGACCTGGACATGCCGCTGGTGGTGGGCTGCCTGCCCAATGCCGCCAGGCCAATGCCCCTCGACCTGCCGGCGGA CAAGACCCGCAGCATCCTGCGTAGCCAGAGCAGCCCGGGCGGTGGAGGCTACAACGAACTGCGCATCGAAGACCGCAAGGGTGCCGAGGAAATCTACCTG CGCGCCCAGCGGGACTGGACCCAGCATGTGCTGCATGACCAGCAGGTGCAGGTCGATAACCAGCGCCGTATGCGGGTGGGCGGCGAGTCGCACCATGAGC TGCAAGGCCAGGAGCAGCGCATTACCCATGGCAATCGCCTCACTGAGCTCAAGCAGGATGATCATCTGGCGGTCGGCGGTTCGCAGTACATGCGTGCCGG GCAGACCATTCAATTGGGCGCTGGGCAAAGCATCGTCATTGATGCCGGTGCCAGCGTGACGATTCAAGCGGGCGGGCAGTCGATCACGCTGTCGGCGGGC GGGATATTCAGCAGTGTGCCGATCCAGCCAGGCGGCGCGCCTGTTCCGGCGGCGCCGCCGTTAATGCCGGGGGTGAAGGAAACATTGTTGGCCGTTATTC CCGCGCCGCTAAGCCCTGCGCAAGCGGCCAGCCTCACGCGCAGTGCGCCGTTTTGCGAAGAGTGTGAGCGCTGCAAAAACGGGCAGTGCGATATCAGCGC CCACGCACGGAGTTTCCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCCTCACCCTTGACGCCCAGCGCCTGGCTGGCCCAAAAACCGTTGCAGCCTGATGAGCAGCTATACGTCGTCATGGGCAGCACCAGCGAGGCCAAGCC GTTTGCAGCCTGGCAAACCATGGCGGTCGCACCACCGCCGCAACCGGTGTGGGCGGGCACGCCCTATGCCGATTGGAATGAGGTGATGCCTTATGTTGGC ATTGTCGAGCCTGGCAGTGCTTTTCTCGACTGGGTAGCCACCACCCAGGCCGTGGACTGGGGCTGGCTGGCGGTGTCTTCGTGCCCGTTGGAGGTTGTGA TCGATCACTTGAAGGGTTTGACCCAGGTGTACCTGCCTGAAGACCAGCCGGTATTTTTGCGCTTCTGGGATGGCGCTCAGTTTTTGCCGATGTTGCAGCA GTTGGGTGACGATGCCGCCACTGTGCTGCCCGTATTCCAGCGTTACTTAATCAACGGCCAGTCGTTGGCAGTCTCGCCCCGCCAGGTGGCTGCGGCCAAA
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFAPANQSVFTLALDGAPSDLKVYEFSGSEAISQPYRFELELVSEQPDIDLESLLHRQVYLGFDDCGHGVHGLVYRVAQGDSGRRLTRYQLSLAPHLAYL AHSSHQRIFQHQTVPQIVAQVLAGQGIHSDSFEFRLSGQYPEREYCVQFGETDLAFIQRLCAEVGIHYHFQHCPDAHLLVFGDDQTVFAQVDQPTPYRPG SGMVAQAPAIKRFTLQLATRTTAVNLRDYDFCKPHLELQSTAADAQLPKLEAQQFPGYFSDRAHGKYLAQRSLERQRSDYRIAQGQSDEPALAGGRFLQL REHPREEWNDIWLVTQVTHEGKQPQVLEEAVTEVVGGAFRQGYGNTFVATPWDAIFRPPLPEQPRPTIAGYQSAVVTGPVDSEIHCDDYGRVKVQLAWDR IGEHNDHASCWLRVASGWAHDRYGVVLIPRVGMEVLVGFVNGDLDMPLVVGCLPNAARPMPLDLPADKTRSILRSQSSPGGGGYNELRIEDRKGAEEIYL RAQRDWTQHVLHDQQVQVDNQRRMRVGGESHHELQGQEQRITHGNRLTELKQDDHLAVGGSQYMRAGQTIQLGAGQSIVIDAGASVTIQAGGQSITLSAG GIFSSVPIQPGGAPVPAAPPLMPGVKETLLAVIPAPLSPAQAASLTRSAPFCEECERCKNGQCDISAHARSFP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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