Strain | Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ACTCATCGCCTTTTGCGGTGAGCATGATGATCGGGATCTGGTTGTTCTGCTGGCGCAGGCGCTTGCATGCGGACAGGCCATCTTCGCCCGGCAGCATCAG GTCGAGCACCACCAGGTTGAACACCTCGCGCTGCAGCAGGCGGTCCATCTGTTCGGTATTGGGCACTGCACGGGCACGGTAGCCCTTGCTGGTGAAGAAA CGTTCCAGCAGGCTGCTTAGCCCCGGGTCGTCGTCGACGATGAGAATCTTGTCACCTTCAGCGGTGTTTGCGGTGCCGGTCATGAATAACTCCTCTGATA TCGCCGCGCATTATGGCGTAGCCATTGCTGCACGTTGCGTGAGCATTGTTAGCAGATTTTTCCCCGGACGCCAGTTCCGGCTGGCCGGGCGCCATCACCG CAAGCCGTTTGCGATGGGTATAATGCGCGGCTTTCCTCCAGCGCCGCCGGGCGAAAAGCCCACAGGCGACCCCCGTATTCACAAATGTCAGGTGGTTTAC
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DNA Sequence for Gene |
>H025_RS0126805
ATGGACAGCATCAACAGCCGTATCGCCGAGGAACTGGGCGTACGCCCCCAGCAGGTCGAGGCGGCCGTGGGCCTGTTGGACGAAGGCTCGACCGTGCCTT TCATCGCCCGTTATCGCAAGGAAGTGACCGGTAGCCTGGACGACACCCAACTGCGCCATCTGGAAGAGCGCCTGCGCTACCTGCGCGAACTCGACGAGCG CCGCGCCAGCATCCTGTCCAGCATCGAGGAACAAGGCAAGCTGACCCCGGAGCTGGCCCGCGAAATCAAGCTGGCCGACACCAAGACCCGCCTCGAAGAC CTGTACCTGCCGTACAAGCAAAAGCGCCGCACCAAGGGCCAGATCGCCCTGGAAGCCGGCCTGGGCGAACTGGCCGACGGCCTGTTCAACGACCCGACCC TGGCACCGGAAAGCGAAGCCGCACGCTTCGTCAACGCCGAAAAAGGCGTGGCCGACGTCAAGGCTGCGCTGGAAGGCGCCAAGTACATCCTGATGGAGCG TTTCGCCGAAGACGCCTCGCTGCTCGAAAAACTGCGCAACTTCCTCAAGCAGGAGTCGGTGCTCAGCGCCCGCGTGGTAGCTGGCAAGGAAGAAGAAGGC GCCAAGTTCCGCGACTACTTCGCCCACGACGAACCGCTGCGCACCGCCCCGTCACACCGCGCCCTGGCAATCTTCCGCGGGCGCAACGAAGGCGTGCTGA GCGCCTCGCTGAAAGTGGGCGAAGAGCTGCCTGGCACCCTGCACCCGTGCGAAGTGATGATCGGCAACCACGTCGGCATCGAAAACCGCAGCCGCCCGGC CGACAAGTGGCTGGGAGAGGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACACCCACCTGGAAACCGACCTGTTCGGCGAGTTGCGCGACAACGCCGAA GGCGAGGCGATCAACGTGTTCGCCCACAATCTGCACGACCTGCTGCTGGCCGCCCCGGCCGGCCCGCGCGCCACCCTGGGCTTCGACCCGGGCCTGCGCA CCGGCTGCAAGATCGCCGTGGTCGATGCCACCGGCAAGCTGCTGGACCACACCACGGTCTACCCGCACGCGCCGAAAAATGACTGGGACCGCACCCTGTC CATCATGGCCGCGCTGTGCGCCAAGCACTCGGTGGAGCTGGTCGCCATCGGCAACGGCACCGCCAGCCGCGAAAGCGACAAGCTGGTGGCCGAGCTGGTC AAAAAATACCCAGCGTTGAAAATCACCAAAATCATGGTCTCCGAAGCCGGTGCTTCGGTGTACTCGGCGTCGGAACTGGCCGCCCGCGAGTTCCCGGACC TGGACGTGTCGATCCGAGGCGCCGTGTCGATCGCCCGCCGCCTGCAGGACCCACTGGCAGAGCTGGTGAAGATCGACCCGAAATCCATCGGTGTCGGCCA GTACCAGCACGACGTGTCCCAGTTGAAACTGGCGCGTAGCCTGGATGCCGTGGTCGAGGACTGCGTGAACGCCGTGGGCGTGGACGTGAACACCGCCTCG GTGGCGCTGCTGACCCGTATTTCCGGCCTTAACGCCACGCTGGCGCAGAATATCGTCGCCCACCGCGATGCCAACGGCCCGTTCGCTACCCGTGCAGCCC TGAAAAAGGTCAGCCGCCTCGGTGAGAAAACCTTCGAACAAGCCGCCGGCTTCCTGCGTGTGATGAACGGCGACAACCCGCTGGACGCCTCTGCAGTACA CCCCGAGGCCTACCCGCTGGTGCAACGCATTGCCGCCGACACCGACCGCGACATCCGTTCGCTGATCGGCGACAGCAGCTTCCTCAAGCGCCTGGACCCG AAAAAGTTCACCGACGAAACCTTCGGCCTGCCGACCGTCACCGACATCCTGCAGGAGCTGGACAAGCCGGGCCGCGACCCACGCCCCGAGTTCAAGACCG CCACCTTCCAGGACGGCGTTGAAGACCTCAAGGACCTGGAGCCGGGCATGATCCTCGAAGGCGTGGTCACCAACGTCACCAACTTTGGCGCCTTCGTCGA CATCGGCGTACACCAGGACGGCCTGGTGCACATCTCGGCGCTGTCGGAAAAGTTCGTCAAGGACCCGCGTGAAGCGGTCAAGGCTGGCGACGTGGTCAAG GTCAAGGTCATGGAAGTGGACATCCCGCGCAAGCGCGTCGGCCTGTCCATGCGCATGAGCGACACACCGGGCGAAAAGGTCGAAGGCAACCGCGGCGGCA ACCGTGGCAATGGCGGCAACCGTCAGCAGCAGGCCCCGCGCCAGCGTGAAACCGCCACTGCCGCACCGGCCAACAACGCCATGGCCGCCCTGTTCGCCAA CGCCAAGCAGCTGAAGAAGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGGACGTACCACGCGAATACGTCGAGAGCGCCTTCAGCCAACTGCTGGGCTGCCGCCTGCAACGCCTGGAAACCGGTGTTGCCGAGGTAGCCCTGGCGCT TGAGCCGCACTTGCGCAACCGGGGCCAGAAGCTGCACGGCGGGGCGATCTTCAGCCTGGTGGACATCGCCATGGGCCTGGCCTGCTCGGCCAACCATGGC TTTGACCGGCAAAGCGTCACCATCGAGTGCAAGATCAACTACATGCGCGCCGTCAGTGACGGCGAAGTGCTGTGTACCGCCCGCGTGCTGCACGCCGGGC GGCGTACCCTGGTGGTCGACGCTGACGTAGTCCAGGGCGACAAACTGGTGGCAAAAGCGCAAGGAACCTTCGCGGTTCTCTAGCTCACCAAGCTGTATCT GCGGTATTTTCAGCAGTGCGCTGGCACTGCTGGAACCGCGTAAACCAGGCGACAACGCCAGTTCCTTTCTTCCTACCCTTGTAGACCGTTATCTCTACCC
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Amino Acid Sequence |
>RNA-binding protein
MDSINSRIAEELGVRPQQVEAAVGLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERRASILSSIEEQGKLTPELAREIKLADTKTRLED LYLPYKQKRRTKGQIALEAGLGELADGLFNDPTLAPESEAARFVNAEKGVADVKAALEGAKYILMERFAEDASLLEKLRNFLKQESVLSARVVAGKEEEG AKFRDYFAHDEPLRTAPSHRALAIFRGRNEGVLSASLKVGEELPGTLHPCEVMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHLETDLFGELRDNAE GEAINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHAPKNDWDRTLSIMAALCAKHSVELVAIGNGTASRESDKLVAELV KKYPALKITKIMVSEAGASVYSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARSLDAVVEDCVNAVGVDVNTAS VALLTRISGLNATLAQNIVAHRDANGPFATRAALKKVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDP KKFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVK VKVMEVDIPRKRVGLSMRMSDTPGEKVEGNRGGNRGNGGNRQQQAPRQRETATAAPANNAMAALFANAKQLKKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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