Pseudomonas sp. URIL14HWK12:I4, H025_RS0126805

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 468 554 6.78E-27
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 319 467 4.55E-53
FunFam G3DSA:1.10.150.310:FF:000001 RNA-binding transcriptional accessory protein - - 497 628 4.5E-49
PANTHER PTHR10724 30S RIBOSOMAL PROTEIN S1 - - 37 751 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 735 755 -
Gene3D G3DSA:1.10.150.310 - - - 497 628 9.5E-53
Gene3D G3DSA:3.30.420.140 - IPR037027 YqgF/RNase H-like domain superfamily 322 449 0.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 558 630 1.89E-20
FunFam G3DSA:1.10.10.650:FF:000001 S1 RNA-binding domain 1 - - 1 108 1.4E-42
Coils Coil Coil - - 165 185 -
MobiDBLite mobidb-lite consensus disorder prediction - - 715 758 -
Pfam PF09371 Tex-like protein N-terminal domain IPR018974 Tex-like protein, N-terminal 8 191 3.5E-71
FunFam G3DSA:2.40.50.140:FF:000051 RNA-binding transcriptional accessory protein - - 632 722 4.4E-39
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 647 718 9.3E-19
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 647 718 1.1E-24
Pfam PF17674 HHH domain IPR041692 HHH domain 9 559 628 3.1E-25
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 635 723 1.94E-25
SUPERFAMILY SSF158832 Tex N-terminal region-like - - 3 318 2.22E-119
Gene3D G3DSA:1.10.3500.10 - IPR023323 Tex-like domain superfamily 109 496 0.0
Pfam PF12836 Helix-hairpin-helix motif - - 489 553 4.5E-28
Pfam PF16921 Tex protein YqgF-like domain IPR032639 Tex protein, YqgF-like domain 324 449 3.1E-53
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 629 724 1.5E-30
Gene3D G3DSA:1.10.10.650 - IPR023319 Tex-like protein, HTH domain superfamily 1 108 2.5E-42
CDD cd05685 S1_Tex IPR044146 Tex, S1 domain 649 716 1.01875E-36
FunFam G3DSA:3.30.420.140:FF:000001 RNA-binding transcriptional accessory protein - - 322 449 6.4E-53
SMART SM00732 rnase_8s IPR006641 YqgF/RNase H-like domain 323 422 1.3E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.