Pseudomonas sp. 45MFCol3.1, G368_RS0115960

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGGGCTAACCACGAGATTCAAGCGCCATGACTTACCGCATCAATGAGTTCCAGTTCCAGCTGCCGGCAAGCGAGCTGCAAGACGCGACGATCAACATCCT CAAGTTCCCCGAACTGGGCACCTCGCTGATTGTCAGCCGCAGCTTGCTGGCCGAGGGCGAAACCTTGCAAAGCAACTTCGACGACCAGCTCAAGCGCCTG GAAAAACAAGTGCAGGACTTGCGTTTTCAACCGGGCGTCGCCGTGCGCCTGGGCGCCAGCCAGGAGGTCGAAGGCATCGAGTTGCGCAGCCAGTTCAACA AGGGCAACGACAAAGTCTTCCAATACCAGTTGGCGCTGGTGTTGCCCGGCACCCGCAAAATGCTCGCCCTGAGCTACGTGAAGGCGGAAAAACTCGGCGA CGCCGAAGCCGCGCATTGGGCGACCATCAAGAGTTCGCTGTTGTTCGACGTTCCGGCCTGATGAGCACCCTGCATGTCTGACGCACTCTGGGCCGCCCGG
DNA Sequence for Gene
>G368_RS0115960
CTGGGCGATGCACTCGACCACACCTCGATGATGGCCGACATCCTCGGCGGCGTGCTGGAGGTGGCAGCGAACATCGCGATCACCGCGCTGGCGACGGCTG CCGTGGTGGCGGCCACGGGCATCACCGTTGCCACCGGCGGCCTCGGTTGCTTTCTGCTCGGCGCGGTGGTGGGCACCATCGTCGGCCTTGCCATGAGCAA GACCGGGGCCGACAAAGGCTTGAGCAACCTGTGCGAGAGCTTCAGCAATTCGCTGTTTCCGCCCACGGTGCAGGCGACGATTCTCACCGGTTCCACCAAC ACCCTGACCAACAACATTCCCGCCGCCCGGGCCGCCGGGGCGATTCCGTCCCATGTCGCGCCGGCCGGCACCGAGCTGGAGGCACCCGAGCCCGAAGCCG AGCCCAGCTATCTGGACATGGCCGAGAGCTTCTTCTCCCAGATGTGGCGCCCCACCGTCGCCACCCCGGCGCCCGGCGCCGTACCCAAGCCGCTGGACCT GGTCACCTGCATGAAGCATCCGCCGATGCCGCCGCAGTTTCTGGCCGAGGGCTCGGACAAAGTCACCATCAACGGCCAGCCCGCCGTGCGCAGCGGCGAC CGCACCACCTGCGACGCCAAGGTCGTATCGTCCGGGCTGATCTCATCGAACGTGACCATTGGTGGCGGTTCGGTGGTAGTGCGTGAGATCCGCAGCGGCA AGACCCCGGGCGTGGGGCTGGCGGTCACCGCGTTGCTGATGCTCAAGGGCGGCAAGGGCAAGTTCTTCAGCAAACTGCCGTGCATGCTGATCGGCGGCGC GACGTCGATGGCTGTCAGCAGCGCCATGGGCGCCATGGCCAACGCCGCCATGGGTTCGTCGAACCCGGTGCATGCTGCGACCGGGGCCAAGGTGCTGGGT GGGGACGAAGAGCTGGATTTCGTGCTGCCGGGCATCTTGCCGATCGATTGGCAGCGCTTCTACAACAGCCGCGACGAACGCCGCGACAGCTTGTTCGGAG CGGGTTGGAGCGTGTCCTACGAGGTGCGGGTTGAAATCCTGCCTCACCCGGAGGGCGGGGAAACGCTGGTGTACACCGATGAACAGGGCCGGCGCATCGA TATGGGCTCGATTCCTCTGGGCGGCGCGGTGTTCAGTGCGGGTGAAGGGCTGAGTGTTCGGCGGCATCGCAATGGGGAATTGTTGATTGAAAGCGATGAC GGGTTGTATCGGCTGTTCGACGGTACACCCGGTAATCCGTCGTTGTTGCGCCTGAACCAGCTCGGTGACCGCAATGACAACCGCATCCACCTCGACTATG ACGACGCCGGACAGTTGGCGCGCCTACGGGACACCTTCGATCTGGTGCAGGTCGAATTGATTCGGGAGCGCGACCGCGTGGCTCGAGTGGAACGCGTGTA TCCCGACCAGCATCGTGAAGTGCTCGTCAGTTATGGCTACGACACAGTGGGCAACCTGGCCGAAGTGCGCGACGCCACCGACCAGGTGCAACGGCGCTTC GCCTACGACGCCGGGCGGCGGATGGTCGAGCATCAGTTGCCTACGGGCCTGCGATGTTTCTATGAATGGGCTTATATCGAGGAAAAAGAGTGGCGCGTGA TCCGGCACTGGACCGACGAGGGCGACACTTACCAGTTCGACTATGACCTGAAGGCCGGTGTCACGCGCATCACCGATGATTTGCAGCGTGTCAGCACACG CCGTTGGAACACCCAGAACCAAATCACCGAATACACCGACAACCTCGGCCAGACCTGGCGGTTCGAGTGGAACGACGAACGCCAATTGCTCAGCGCCACC GACCCGCAGGGCGGGCGCTACGAATACAGCTACGACGACGCCGGCAACCTGATCGGCGAAACCGACCCGCTGGGCCGCAGTGACTCGACCCTATGGCTCG AGCACTGGGCCTTGCCGCTGGTGGAAACCGACGCCGCCGGCAACAGCTGGCAATATCGCTACGATCAGCGAGGCAACTGCATCGCCGAAACCGATCCGCT GGACCATGTCACCCGCTACCGCTACGACACCCAAGGCCAGGTCGTCGAGATCATCGACGCCACCGGCAAAAGCAAAAGACTGCGCTGGAACCCGTTCGGC CAACTGGTCGAACACATCGATTGCTCGGGTTATCCGACGCGGTTCAACTACGACAACCGGGGCTATCTGCAAACGATCACCGATGCCCTCGGCGAACGCA CCCAATTCAGCTACGACGCCCAGGGGCGGTTGCTCAGCAGCCAATTGCCGGACGGTCGCACCGAACAGTATCAGCGCGACGTCGCCGGCCAGTTGATCGG CTACACCGACCCGGCTGGGCACACCACGCTGTATCAACACAACCGCCGCGGCCAGGTGCGCCAGCGTACCGACGCCCACGGCCGGCAGGTGCAGTTTGGA TATGACCGCTATGGGCGGCTGCAGGCGCTGACCAATGAGAATGGCGAAAGTTATCGCTTCGCCTGGGATGCAGGGGATCGGCTGACAGAACAACAGGATC TGGATGGCAGTGCCAAGCGCTACACCTATGACCTGCTGGATAACGTCGCGGCGGTCACGGCTGTTCCGGCGCCTTACGGCAACGGCCTGGCCGTCGTCCC CGAGTCGCCCCCCGCTCCCATCGTTCACCGACTGGAACGCGACGCCGTCGGCCGGCTGATCGCCAAAGTCACCGACGATGGCCGCACCGACTACTCCTAC GACCCACTGGACCAGCTCACCGCCGTCACCTTCACCGACCACCAGGGCAACGCACAAACCCTGAGCTTCGCCTACGACGCCCTCGGCCAGTTGCTCGAAG AACAAAGCGCGGCCGGCAACCTGCACTACCACTACGACGAACTCGGCAACCTGATCCAGACCCAACTGCCCGACGGCCGCTGGCTCAATCGCCTGTACTA CGGCAGCGGCCACCTGCACCAGATCAACCTCGACGGCCAGGTCATCAGCGACTTCGAACGCGACCGCCTGCACCGCGAAGTGCTGCGCACCCAAGGCCAG ATCAGCACTCGTAGCGAATACGACCGCAGCGGGCGCTTACGCTCACGCCAACGCCGACACAGCAGCCAGCCATCGCTGATGCCGGCAGCGGTGCAGAAAC ATTTCGAGTACGACCCCGCCGACAACCTGATCGGCAAACTCGACCAGCAACCCACCACGCAACACCGCCAACTGCTGCACTACGACGCCACTGGCCGCAT CATCGCCAGCCAGGACAGCCTGCACGGCCAGCGCGAAACCTTCGCCTACGACGCCGCCGCCAACCTGCTGGACGGCCCACAACCCGGCGCCGGGCTGGTG GTGCACAACAAACTGCTGACCTA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
Amino Acid Sequence
>type IV secretion protein Rhs
MGDALDHTSMMADILGGVLEVAANIAITALATAAVVAATGITVATGGLGCFLLGAVVGTIVGLAMSKTGADKGLSNLCESFSNSLFPPTVQATILTGSTN TLTNNIPAARAAGAIPSHVAPAGTELEAPEPEAEPSYLDMAESFFSQMWRPTVATPAPGAVPKPLDLVTCMKHPPMPPQFLAEGSDKVTINGQPAVRSGD RTTCDAKVVSSGLISSNVTIGGGSVVVREIRSGKTPGVGLAVTALLMLKGGKGKFFSKLPCMLIGGATSMAVSSAMGAMANAAMGSSNPVHAATGAKVLG GDEELDFVLPGILPIDWQRFYNSRDERRDSLFGAGWSVSYEVRVEILPHPEGGETLVYTDEQGRRIDMGSIPLGGAVFSAGEGLSVRRHRNGELLIESDD GLYRLFDGTPGNPSLLRLNQLGDRNDNRIHLDYDDAGQLARLRDTFDLVQVELIRERDRVARVERVYPDQHREVLVSYGYDTVGNLAEVRDATDQVQRRF AYDAGRRMVEHQLPTGLRCFYEWAYIEEKEWRVIRHWTDEGDTYQFDYDLKAGVTRITDDLQRVSTRRWNTQNQITEYTDNLGQTWRFEWNDERQLLSAT DPQGGRYEYSYDDAGNLIGETDPLGRSDSTLWLEHWALPLVETDAAGNSWQYRYDQRGNCIAETDPLDHVTRYRYDTQGQVVEIIDATGKSKRLRWNPFG QLVEHIDCSGYPTRFNYDNRGYLQTITDALGERTQFSYDAQGRLLSSQLPDGRTEQYQRDVAGQLIGYTDPAGHTTLYQHNRRGQVRQRTDAHGRQVQFG YDRYGRLQALTNENGESYRFAWDAGDRLTEQQDLDGSAKRYTYDLLDNVAAVTAVPAPYGNGLAVVPESPPAPIVHRLERDAVGRLIAKVTDDGRTDYSY DPLDQLTAVTFTDHQGNAQTLSFAYDALGQLLEEQSAAGNLHYHYDELGNLIQTQLPDGRWLNRLYYGSGHLHQINLDGQVISDFERDRLHREVLRTQGQ ISTRSEYDRSGRLRSRQRRHSSQPSLMPAAVQKHFEYDPADNLIGKLDQQPTTQHRQLLHYDATGRIIASQDSLHGQRETFAYDAAANLLDGPQPGAGLV VHNKLLT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site