Pseudomonas sp. 45MFCol3.1, G368_RS0115960
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 643 | 666 | 9.1E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 696 | 732 | 2.4E-7 |
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 156 | 221 | 5.6E-14 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 940 | 1103 | 1.4E-16 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 738 | 778 | 9.7E-9 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 595 | 626 | 8.7E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 738 | 775 | 1.7E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 569 | 605 | 4.0E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 801 | 842 | 1.1E-6 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 781 | 816 | 4.2E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 675 | 707 | 3.1E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 590 | 628 | 1.3E-8 |
| CDD | cd14742 | PAAR_RHS | - | - | 91 | 221 | 1.87138E-24 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1003 | 1027 | - |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 780 | 809 | 0.0041 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 881 | 911 | 1.8E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 642 | 673 | 2.0E-6 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 658 | 689 | 1.9E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 669 | 694 | 0.0015 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 480 | 516 | 1.4E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 696 | 736 | 1.0E-6 |
| PANTHER | PTHR32305 | - | - | - | 642 | 1089 | 1.6E-20 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 288 | 367 | 1.8E-22 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 569 | 606 | 3.7E-8 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 350 | 521 | 1.0E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 925 | 960 | 8.2E-4 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 166 | 210 | 8.2E-10 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 522 | 818 | 1.8E-40 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 881 | 914 | 3.0E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 925 | 960 | 1.8E-6 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.