Pseudomonas thermotolerans DSM 14292, H165_RS0116765

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 duf1_3 IPR000160 GGDEF domain 638 814 4.7E-69
Pfam PF13426 PAS domain IPR000014 PAS domain 401 514 0.0011
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 240 374 3.54E-19
SMART SM00052 duf2_2 IPR001633 EAL domain 824 1070 1.7E-126
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 651 820 2.4E-62
Gene3D G3DSA:3.30.450.20 PAS domain - - 146 251 3.1E-5
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 528 644 2.5E-15
CDD cd00130 PAS IPR000014 PAS domain 533 635 1.8879E-13
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 654 816 2.88E-50
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 384 523 1.5E-12
SMART SM00091 pas_2 IPR000014 PAS domain 388 454 0.023
CDD cd00130 PAS IPR000014 PAS domain 397 513 1.30913E-5
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 649 810 1.1E-50
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 536 646 2.09E-23
SMART SM00086 pac_2 IPR001610 PAC motif 474 516 0.017
SMART SM00091 pas_2 IPR000014 PAS domain 524 590 4.7E-8
Pfam PF08447 PAS fold IPR013655 PAS fold-3 282 370 4.3E-15
SMART SM00091 pas_2 IPR000014 PAS domain 255 324 4.8E-5
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 644 815 1.2E-44
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 646 812 8.3E-42
Gene3D G3DSA:3.30.450.20 PAS domain - - 527 650 1.6E-29
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 824 1078 2.0E-106
SMART SM00086 pac_2 IPR001610 PAC motif 596 638 0.0015
Pfam PF13426 PAS domain IPR000014 PAS domain 536 637 1.2E-16
CDD cd00130 PAS IPR000014 PAS domain 264 373 5.76335E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 252 374 3.9E-21
CDD cd01948 EAL IPR001633 EAL domain 830 1070 1.04761E-117
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 373 514 4.83E-18
SMART SM00086 pac_2 IPR001610 PAC motif 333 376 9.4E-9
SMART SM00086 pac_2 IPR001610 PAC motif 202 243 270.0
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 825 1077 1.9E-100
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 523 1073 0.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 150 250 5.41E-7
CDD cd01949 GGDEF IPR000160 GGDEF domain 650 812 3.22516E-61
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 829 1074 9.02E-93
Pfam PF00563 EAL domain IPR001633 EAL domain 830 1065 6.1E-78
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 252 383 3.9E-14
Gene3D G3DSA:3.30.450.20 PAS domain - - 386 526 1.5E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.