Pseudomonas vranovensis DSM 16006, H621_RS0122765

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.120.160
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 432 529 0.0088
Gene3D G3DSA:3.40.50.2300 - - - 1649 1768 1.8E-41
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1649 1760 4.94879E-32
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1480 1613 1.12E-22
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 569 658 6.78408E-7
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1007 1099 1.9E-14
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1441 1459 9.9E-12
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1465 1478 9.9E-12
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 864 993 6.9E-19
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 432 553 4.06E-26
CDD cd16916 HATPase_CheA-like - - 1303 1478 1.16788E-76
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 710 832 1.32E-14
Coils Coil Coil - - 1180 1214 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 568 690 2.75E-19
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1005 1139 8.1E-28
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 16 131 4.8E-7
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 571 668 2.4E-10
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1344 1480 4.6E-14
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 9 129 5.89E-14
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1005 1103 4.9516E-12
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 564 695 3.5E-17
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 432 563 2.9E-29
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1296 1480 4.6E-60
SMART SM00260 chew_2 IPR002545 CheW-like domain 1473 1617 2.9E-23
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 434 524 2.4E-13
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1647 1760 9.2E-38
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 432 525 5.2702E-9
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1385 1399 9.9E-12
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1156 1295 3.7E-9
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1005 1122 3.93E-26
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 867 966 2.9E-5
Coils Coil Coil - - 295 315 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 867 986 3.87E-19
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 569 665 5.7E-5
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1486 1618 3.2E-22
Coils Coil Coil - - 440 460 -
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1005 1102 2.7E-7
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 711 839 2.4E-12
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 287 410 4.71E-11
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1649 1760 2.0E-28
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1646 1766 1.57E-37
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1555 1615 7.2E-20
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1297 1478 1.3E-35
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1294 1480 2.1E-52
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1340 1481 2.6E-22
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 434 555 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.