Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0117240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGAATTCTACAGTT TCCATGGAGGGTGTCAAGCGCTACTTGTTGATTCTTTTGATTTTTTTGTCGCCCTTTCTCAGGGCCAAAGAAAAAGGCCACTGCGTTAACAGTGGCCTTC TCTCGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGCCTGTGAGATCGAA TTCTACGGATTTCCCTGGAGGTGTCAAGCTTTATTCTAAAAAAACCTTTCCCGTTCAAACTCTTAGCAGCCGTAAAGGGGGAGCGCCCCAGGCGTGGCGG GGTTTTCAGGCCGGTAATCGGGCAACCCTGGGCACAGGCTGTTTCACTCCAGGCCTCATGCGCTACTATCTGTATGAATTTACAGTGCTCACGGTCATCC
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| DNA Sequence for Gene |
>H619_RS0117240
ATGTCTTTGCGCAAGATCATCCACGTCGACTGCGACTGCTTCTACGCAGCAATCGAGATGCGCGACGACCCGCGCCTGGCCGGTCGGCCGATGGCAGTGG GTGGCTCCGCCGAGCGGCGTGGGGTCATCGCCACCTGCAATTATGAGGCGCGTGCCTATGGTGTGCGCTCGGCCATGTCGTCCCGCCATGCCCTCAAGCT GTGCCCGGACCTGTTGATCGTGAAGCCGCGTTTCGAGGCCTACCGCGAAGCTTCCCGTGAAATCCACAGTATTTTCCGCGAGTACACCGACCTGATCGAG CCGTTGTCCCTTGATGAAGCCTATCTGGACGTCAGTGACAGCCAGTGGTACGCCGGCAGCGCCACGCGCATCGCTGAAGACATTCGCCGGCGTGTTGCCC GCACGCTGCACATCACGGTTTCTGCAGGTGTGGCGCCCAACAAGTTCCTGGCCAAGATCGCCAGTGACTGGCGTAAGCCCAATGGGTTGTTTGTGATAAC GCCCGGCGAGGTCGAGGCGTTTGTCGCCGCATTGCCGGTTGCCAGGCTGCATGGTGTGGGCAAGGTGACCGCAGAGAAGCTGACGCGCCTTGGCATTGAA ACCTGCCTGCAACTGCGAGACTGGTCGCGCCTGGCGCTGGTGCGCGAATTTGGCAGTTTCGGCGAGCGCTTGTGGGGGTTGGCGCGAGGCATTGACGAGC GGGTTGTTCATAACGACAGCCGTCGCCAATCGGTCAGCGTGGAAAACACCTACGACACCGACCTGCCGGACCTGGCCAGTTGCCTGGCGCGCTTGCCGGA GCTGCTGGAAAGCCTGAATACCCGCATCGAACGAATGGACGCCAGCTACCGACCGGACAAACCCTTCGTCAAGGTCAAGTTCCACGACTTCACCCAGACT ACGCTGGAGCAGGCCGGGGCGGGCAGGGATCTGGACAGTTATCGGCAGTTATTGGGGCAGGCGTTCGCCAGGGGTGGCAAACCGGTGCGCTTGCTGGGGG TAGGGGTGAGGTTGCGTGACCTGCGCGGGGCGCATGAACAGATGGAGTTGTTCCCACCGCAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTACCTGGCGACGGTGCGCCCGCTCTCTATAAAGAAGGCGCATTTTGCCAGTGGATCAATGGGTCAGTGCGCGCCTGGGTCGGCCACCAGCCGGCCGGT TGCCTTGGTCAACGACTTGAGAAACTCCTGTTGCAGCTCCGGGTCGTTGCGCGTCAGCTCGATCAGGCTTTGCTCCATTTCGCTGGCTTCCTCTTCCAGG CCCAGCTCTGACAGGCGTTTGACCCGGTGCACCCATTGCCCGACATCGTCGTCTTCGAGGTCGTCGAAAATCAGCTCGTGGGCTTCGCGCAACTTGTTGC GCAGCGTGGCGCTGACCAACAGGCTGGCATCACCGCGTACCGCGTTGTCTTCATCCACGACCTGTAGATGCAGTGTGCCAACGTGGTTGAGGTTCTGTTC GGAGAACGGAGTGTCCAGCAGGTTCAAGCGCAACATGCCATTGCGGTCGGTGGTGAGTTCGTGGGTCACCTTGCCCGCTTTCACCTCGACCAGGCGCTCG
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| Amino Acid Sequence |
>DNA polymerase IV
MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSAERRGVIATCNYEARAYGVRSAMSSRHALKLCPDLLIVKPRFEAYREASREIHSIFREYTDLIE PLSLDEAYLDVSDSQWYAGSATRIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPGEVEAFVAALPVARLHGVGKVTAEKLTRLGIE TCLQLRDWSRLALVREFGSFGERLWGLARGIDERVVHNDSRRQSVSVENTYDTDLPDLASCLARLPELLESLNTRIERMDASYRPDKPFVKVKFHDFTQT TLEQAGAGRDLDSYRQLLGQAFARGGKPVRLLGVGVRLRDLRGAHEQMELFPPQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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