Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0117240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF11799
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003684 damaged DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF11799
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03586
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.150.20 - - - 177 231 4.5E-18
Hamap MF_01113 DNA polymerase IV [dinB]. IPR022880 DNA polymerase IV 3 350 36.834515
FunFam G3DSA:3.30.70.270:FF:000002 DNA polymerase IV - - 70 167 2.2E-39
Gene3D G3DSA:3.30.1490.100 - IPR036775 DNA polymerase, Y-family, little finger domain superfamily 243 351 8.6E-23
SUPERFAMILY SSF100879 Lesion bypass DNA polymerase (Y-family), little finger domain IPR036775 DNA polymerase, Y-family, little finger domain superfamily 244 350 1.96E-21
Gene3D G3DSA:3.40.1170.60 - - - 23 75 1.1E-65
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 6 168 1.1E-65
Pfam PF11799 impB/mucB/samB family C-terminal domain IPR017961 DNA polymerase, Y-family, little finger domain 242 337 4.6E-6
SUPERFAMILY SSF56672 DNA/RNA polymerases IPR043502 DNA/RNA polymerase superfamily 3 236 1.87E-92
FunFam G3DSA:1.10.150.20:FF:000019 DNA polymerase IV - - 169 230 2.3E-23
Pfam PF11798 IMS family HHH motif IPR024728 DNA polymerase type-Y, HhH motif 168 199 1.5E-6
PANTHER PTHR11076 DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER - - 4 342 1.8E-95
CDD cd03586 PolY_Pol_IV_kappa IPR022880 DNA polymerase IV 7 336 0.0
Pfam PF00817 impB/mucB/samB family IPR001126 UmuC domain 9 156 4.9E-53
FunFam G3DSA:3.40.1170.60:FF:000001 DNA polymerase IV - - 23 75 8.6E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.