Pseudomonas sp. CFT9, CFT9_22003
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig56, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGACCCGCTCTTTCATTTCCCGTGCCGCCTTGTTGGTGAAGGTCATGGCGACGATGTACTGGGCGCGGATGCCGCAGTTCTGGATCAAGTGCGCGATC TTGCGCGTGATCACGCTGGTCTTGCCGGAGCCTGCACCGGCGAGCACCAATAGAGGGCCGCCGACGTAGTTCACGGCTTCTTGCTGCCGGGGATTGAGTC GGGACATACGGAATTTTAGGGGTCGTTGTTCAAAAGGGCGGGCATTTTAACAGGCTGGAAAGATTCTGCTGCCATAGAACGACGGTGTGACGTACCACTC GATCTAAATTTGCCGGTTTTGCTACTTTGCCGCAGGATGTGGAGGAATATCCGAGACGATTATTTACAGTCTGCGTATTTGATAACACCTATCATTTGTC ATCCTTTGTCATTGTCAGGCCGCACGTCATAATGGCACCGCTAATGAAATTTTGCAGAGTCTAGGGAGTTAGCGTGTCTACGCCTGTCGAACCCTTGCGT
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| DNA Sequence for Gene |
>CFT9_22003
TTGCTGCTGCTGGCCGATGAGCCTGAGTGGGCAGCGTTGTTGCGCGAGTGCCTGGCGCCGATGGGCGAAGGGGCTGTGCTGATCAGTGCGCCCAACTGGG ACTCGGTAAGCCGCCTGTTCGATGACGACCAGGGTGCTGTGTTATTGACCACGCCCAGCCTGCAGCCAGGCCCTGGCCGGTGCAGCCTGCCGTGTGTATT GCTGCTGGAGCAGGAGCCACTGGTGTCGCCGCTGGGTGTCAGCGATTGGTTGGTGTTGGATGCATTGGACGCCGACACATTGCGCCGCTGCCTGCGCCAT GTGCGCGAGCGCGGCGTGCTGGAGAATACCTTGCAGCGCCTGGCCGAGCAGGACCCGCTCACCGGTATTGCCAACCGTCAGGGCTTCCAGACCTTGCTCG CTGCACGCTTGGCGGACAATGACGGCCGTGGCCTGGCCCTCGGTCATCTGGACCTGGACAATTTTCGTCATGCCAACGATGCTCTCGGCCATCAGGCGGG CGACCGGTTGATCCTGCAAGTGGTGTCGCGGCTCAAGAGCCAGCTCGAAGCCGGGGACCAACTGGCGCGCCTGGGCAGCGATGAGTTTGCCTTGTTGATC GATACCCGCCGGGCGCCTCAGCGCGCCGAGTGGATGGCTGAGCGCATCACCGAAGTGATGGCCGAGCCCTACTGGGTGGATGGTGAAAGCTTGTTGATTG GTTGCAGCCTGGGTATGGCCCATGCTCGAGCCCGCGCTGGCGCCGACCCGTTGATGTGGCATGCCCATATCGCCATGCAGCAGGCCAAAAGTACCCAGGG CTGCACCTTCCATATCTTCAATGAGCGCATCAACCGCAACGCCCGCAGCCTGGCCGACCTGGAAAGTGAACTGCGCCGGGCTTTGCGTCGCGATGAGTTG GAGCTGCATTACCAGCCGCGCCTGGACCTGGACGACGGTCATATCGTTGGCCTCGAAGCCCTGGTGCGCTGGCGTCACGGCGAGCGCGGCTTGTTGCCGC CCAGCGAGTTCGTGCCGCTGGCCGAACAGAGTGGCTTGATCGTGCCATTGGGCTACTGGGTGATCTCCCGAGCCCTGCGCGACATGCAAGACCTGCGTGA ACGCGGCCTGCCGCCGCTGCACATGGCGGTCAACCTGTCGTTTCGCCAGTTCCAGGACAGTCAGTTGCTGTCTACCCTCAGCCGCCTGATTGCCGAGCGC GGCGTGGAAGCGCAATGGCTGGAGTTCGAATTGACCGAAACCGCCGTGATGCGCCGCAGCGACCTGGTCAAGCAGACCATGGACGCCCTTGGCCGGCTGG GTGTGCGGTTTTCCCTGGATGACTTCGGCACCGGTTTTTCGTCGTTTGTGCACCTCAACAGCCTGCCGATTGCCTTGTTGAAGATCGACAAGAGCTTTGT CGGCGGCATGGAAGAGCGCGAAGAAAACCGCAAGCTGGTGCACGCCATGATCAACCTGGCCCACAACCTCAATCTGGAAGTGGTCGCCGAAGGCGTGGAA ACCCCTGAGCAACTTGAACTTTTGCGCTTGTTTGGGTGCGATCAGGTCCAGGGTTACCTGATCAGCAAGCCGTTGCCGTTGCCGGAGCTGGTGGAATATC TGCTGTTTGGTCAAAGCCAGCAGGCGCTGTTGGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTTCAAAGTGGTTCAAATGTGGGAGCAGGCAAGCCAGCTCCCACATGGACCGCGTGCACTCGCTAGTCAGGCAGTGCCGCTTGGAAACCAACAGGAGC ATCTGGCTCCTGCCGAATCATCCGCTTCATCTTCGCCTCAAACGCCCAGGTCAGGCTCACCGCCGCACACGCCAGGCCCAGTGCCAGGCCCCACCAGACG CCGGTGGGCCCCCAGCCCAGGGTGAACGCCATCAACCAGGCCGACGGTGCGCCAATCAGCCAATAGCAACCCAGCCCCACCAGGAAGGTGGTCTTGGCGT CCTTCAAACCCCGGATACAACCCATGGCGATGGTCTGCACACCGTCGAACAATTCGAACCAGGCGGCGACGGCCAGCAGGCTCACCGCCAGGACGATGAC GTCATGGAACGCCGGGTCGTCATGGTCGAGGAACAGCCCGATCAGTGGGTCGGAAAACAGCCACAGCACTGCTGCGAATCCCAACATCACCATGGCCCCG
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| Amino Acid Sequence |
>putative EAL/GGDEF domain-containing protein
MLLLADEPEWAALLRECLAPMGEGAVLISAPNWDSVSRLFDDDQGAVLLTTPSLQPGPGRCSLPCVLLLEQEPLVSPLGVSDWLVLDALDADTLRRCLRH VRERGVLENTLQRLAEQDPLTGIANRQGFQTLLAARLADNDGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEAGDQLARLGSDEFALLI DTRRAPQRAEWMAERITEVMAEPYWVDGESLLIGCSLGMAHARARAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESELRRALRRDEL ELHYQPRLDLDDGHIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQDLRERGLPPLHMAVNLSFRQFQDSQLLSTLSRLIAER GVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEEREENRKLVHAMINLAHNLNLEVVAEGVE TPEQLELLRLFGCDQVQGYLISKPLPLPELVEYLLFGQSQQALLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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