Pseudomonas sp. CFT9, CFT9_17926 (flhA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig49, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAAGTGTTTCACTAAGGTTGACCAGCAGGTCTTCGCTGCTGATGCCGTCGGCTACGGTAAACAGCCGGGTGGGGGAATTTGAGGCGTGTTTGATCACT GTGAAGCTCCTTTTAGAAAGGGAGAGGGTGCTTTTGCTCCTAGGTAATCCGGGCCGCGACGCCCGTCCGCTGCGTTTGCAGCGGTGTACGGAGACTAGAG AGCGAGTTTCCTAGGGGCAACCCCAAATCCTTATCGGAAATTTCCTCGATATCCAAGGTGCACACAAATCCAAATGTGGGAGCTGGCTGGCCTGCGATAG CTGATTTACAGCCAATATCTCAGTGGCTGACACACCGCAATCGCAGGCAAGCCAGCTCCCACACTTGAATCGGCTACCACTCGAGAATCATCCCAAAACC AAAGTTGGAAGGCTTCTTGCAACCCCGCCTCCAAGTCGCCCTCCAGCGTCAAAACTTTGCTTCAAGGACCCGAGGAATACCGGTGGTAGATCGCTCTCAA
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| DNA Sequence for Gene |
>CFT9_17926
|flhA
ATGCTCAACACGGCCCGTGGCACCCTGACTGACCTGTCGCGGGGCAATCTGGGTGTGCCGTTGTTGTTGCTGGTGATGCTGGCAATGATGATGTTGCCGA TGCCGCCCTTCCTGCTCGACGTGTTCTTTACCTTCAACATTGCCCTGTCTGTCGTGGTCTTGCTGGTGTGCGTGTACGCCTTGCGGCCGCTGGATTTCGC GGTGTTCCCGACGATTCTGCTGGTGGCGACCCTGCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGTCATGCC GCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTG TGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCTCGACGCCATGCCCGGCAAGCAGATGGCCATCGACGCCGACCTCAA CGCCGGCTTGATCGACCAGAACCAAGCCAAGTCGCGCCGGGCCGAAGTTGCTCAGGAAGCCGAGTTCTACGGCTCCATGGACGGCGCCAGCAAATTTGTG CGCGGTGACGCCATCGCTGGCCTGTTGATTCTGTTTATCAACCTGATCGGCGGCATGGCGGTCGGTATCTTCCAGCACGGCATGACCTTCGGCGATGCCG GCAAGGTGTACGCCTTGCTGACCATTGGTGACGGTTTAGTGGCGCAATTGCCATCACTGTTGTTATCCACAGCGGCGGCCATCATGGTTACCCGTGCTTC GGGCTCCGAAGACATGGGCAAGCAGATCAGCCGGCAGATGTTCGCTTCGCCCAAGGCCCTGGCCGTGGCGGCGGGCATTATGGCGATCATGGGTATCGTG CCGGGCATGCCGCACTTCTCGTTCCTGAGCATGGCGGCCCTGGCGGGTGGCGCGGCGTACCTGTTCTGGAAGAAGCAGAACCAGGTCAAGGTCCAGGCCG AGCAGGAGATTGCCCGTCAACAGGATCTGCTGCCATCCCCGGCCCGTGCCCAGGAAACCAAGGAACTGGGCTGGGACGACGTCACGCCCATCGACATGAT CGGCCTGGAAGTCGGCTACCGCCTGATCCCGCTGGTCGACCGCAACCAGGGTGGGCAACTGCTGGCGCGAATCAAGGGCGTGCGCAAGAAGCTGTCGCAG GACTTGGGCTTCCTGATGCCCACTGTGCATATCCGTGACAACCTCGACCTGGCCCCCAGCGCCTATCGCCTGACCCTGATGGGGGTGATCCTGGCCGAAG CCGAGATCTACCCGGACCGCGAACTGGCGATCAACCCCGGCCAAGTGTTCGGTACGCTCAACGGCATCACCGCCAAAGATCCGGCTTTCGGCCTGGAAGC GGTGTGGATCGAAGTCAGCCAGCGCAGCCAGGCGCAGTCCCTCGGTTACACCGTGGTGGATGCCAGCACCGTGGTCGCCACGCACCTCAACCAGATTCTC TACAAGCACTCCCACGAGCTGATCGGCCACGAGGAAGTCCAGCAATTGATGGGCTTGCTGGCCAAATCGTCGCCAAAACTGGCCGAAGAGCTGGTGCCTG GCGTGCTGTCGTTGTCGCAGTTGCTCAAGGTGTTGCAAGCGCTGTTGGCCGAACAGGTGCCTGTGCGCGACATTCGCAGCATTGCCGAGGCCATCGCCAA CAATGCCGCCAAGAGTCAAGATACTGCCGCTCTGGTGGCGGCGGTGCGTGTCGGCGTGTCCCGCGCAATCGTGCAAAGCATTGTAGGGACTGAGTCCGAG CTGCCTGTGATCACCTTGGAACCCAGGTTGGAACAAATATTGCTCAATAGTATTCAGAAGGCAGGGCAAGGCCAGGAAGAGGGCGTTTTACTGGAGCCAA GCATGGCTGAAAAGCTGCAGCGTTCGTTGATCGACGCCGCACAGCGCCAGGAAATGCAGGGCAACCCGGTGATCCTGCTGGTGGCCGGCCCGGTTCGCGC GATGTTGTCGCGGTTTGGACGCCTGGCTGTACCGAATTTGCACGTGTTGGCTTACCAGGAAATTCCTGACAATAAGCAAGTGACTATCGTCGCGACAGTT GGGCCCAATGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGGGTTATGCAAGTTAAGCGTTTTTTCGCCGCCGATATGCGTCAGGCCATGAAGTTGGTCCGCGATGAGCTGGGCGCCGATGCCGCGATTATCGG TAACCGTCGGATTGCTGGCGGTGTCGAGCTGACGGCTGCCCTGGATTACACGCCCCAGGCGCTGGCCCCGCGCGTGCCGAACATGGAACTCGAAGACGAG CTGCGCAAGACCGCCTCGCGCATTGTGTCGGCCCAGGCTGAACTGAGCATGCGCGGTGACAGCGATGCCAGCACCAATCGCCAATTATTCGCCGGCCTGC CGCTGACCGCCGCCGAGCCGCTGGTTGAGCCCACCTTTGTCGAACCGCCGCGTCCTGCAGCGCCTGCCCCGGCCGCCGCAGTTGACCAGCGTGTGATCGA CTCGATGCGCTTTGAACTCAATGGCCTGCGTGAATTGCTCGAAGTGCAGCTGGGCTCGTTGGCCTGGACTCAGTTGCAAGGCAGCAAGCCCCAGCAAGCC
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MLNTARGTLTDLSRGNLGVPLLLLVMLAMMMLPMPPFLLDVFFTFNIALSVVVLLVCVYALRPLDFAVFPTILLVATLLRLALNVASTRVVMLHGQDGHA AAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQNQAKSRRAEVAQEAEFYGSMDGASKFV RGDAIAGLLILFINLIGGMAVGIFQHGMTFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKQISRQMFASPKALAVAAGIMAIMGIV PGMPHFSFLSMAALAGGAAYLFWKKQNQVKVQAEQEIARQQDLLPSPARAQETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQ DLGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITAKDPAFGLEAVWIEVSQRSQAQSLGYTVVDASTVVATHLNQIL YKHSHELIGHEEVQQLMGLLAKSSPKLAEELVPGVLSLSQLLKVLQALLAEQVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGVSRAIVQSIVGTESE LPVITLEPRLEQILLNSIQKAGQGQEEGVLLEPSMAEKLQRSLIDAAQRQEMQGNPVILLVAGPVRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATV GPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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