Pseudomonas sp. CFII64, CFII64_11986

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 834 995 6.3E-51
SMART SM00086 pac_2 IPR001610 PAC motif 518 561 0.012
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 839 1000 5.89E-49
SMART SM00052 duf2_2 IPR001633 EAL domain 1009 1255 1.4E-125
CDD cd00130 PAS IPR000014 PAS domain 718 820 2.42163E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 35 154 1.4E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 267 432 6.5E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 711 835 3.6E-29
SMART SM00091 pas_2 IPR000014 PAS domain 709 775 1.6E-7
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1010 1264 1.9E-101
SMART SM00086 pac_2 IPR001610 PAC motif 387 428 170.0
Pfam PF00563 EAL domain IPR001633 EAL domain 1015 1250 6.7E-77
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 836 1005 5.9E-61
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 713 829 1.8E-18
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 709 1259 0.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 425 559 5.96E-14
Pfam PF08447 PAS fold IPR013655 PAS fold-3 464 555 2.2E-7
SMART SM00086 pac_2 IPR001610 PAC motif 659 701 0.33
SMART SM00091 pas_2 IPR000014 PAS domain 573 640 0.062
SMART SM00091 pas_2 IPR000014 PAS domain 440 510 0.23
Pfam PF00989 PAS fold IPR013767 PAS fold 574 698 7.5E-5
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 829 1001 3.7E-45
CDD cd01949 GGDEF IPR000160 GGDEF domain 835 997 5.62223E-62
Gene3D G3DSA:3.30.450.20 PAS domain - - 571 710 8.3E-20
CDD cd00130 PAS IPR000014 PAS domain 462 558 6.27251E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 269 426 1.57E-6
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1009 1265 5.3E-106
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 558 699 1.48E-15
SMART SM00086 pac_2 IPR001610 PAC motif 781 823 4.3E-4
CDD cd01948 EAL IPR001633 EAL domain 1015 1253 6.27181E-116
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 569 708 2.9E-10
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1014 1261 1.24E-92
Gene3D G3DSA:3.30.450.20 PAS domain - - 433 559 3.2E-14
Pfam PF13426 PAS domain IPR000014 PAS domain 721 822 9.8E-15
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 721 831 4.19E-23
SMART SM00267 duf1_3 IPR000160 GGDEF domain 823 999 2.2E-69
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 831 997 3.1E-41
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 436 568 3.4E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.