Pseudomonas sp. CFII64, CFII64_08182
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 603 | 855 | 1.2E-99 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 609 | 844 | 5.48193E-112 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 68 | 228 | 2.8E-19 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 433 | 588 | 8.1E-48 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 608 | 850 | 6.93E-90 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 315 | 369 | 2.3E-5 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 429 | 591 | 1.6E-42 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 323 | 418 | 3.22927E-7 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 311 | 427 | 3.8E-10 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 300 | 851 | 0.0 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 421 | 593 | 6.6E-67 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 427 | 594 | 1.2E-42 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 603 | 845 | 1.6E-115 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 437 | 595 | 2.59E-49 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 433 | 591 | 4.59686E-63 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 431 | 602 | 6.2E-58 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 300 | 427 | 2.6E-14 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 609 | 840 | 4.5E-72 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 314 | 380 | 1.2E-9 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 604 | 854 | 3.9E-89 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 302 | 419 | 5.58E-15 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.