Pseudomonas sp. CFII64, CFII64_04970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACCGATCCATGACTTGTCGAAGCTGTCCGATGCGCTGTCGGTCGAGTCAGCGCCCGCCGCGCATCAAGTGGCGCCACACGCGCCGGTGGTCAAGGCGC TCAATGGCCAACGGGTGCGCCTGCCGGGTTATATCGTGCCGCTGGAAGTCAGCGAAGAAGGCCGGGTGATCGAGTTCCTGCTGGTCCCGTACTTCGGCGC GTGCATTCATGTGCCACCGCCGCCCTCGAACCAGATCGTGCATGTCACCAGCGAGCTGGGTGTGAAGGTTGACGAGTTGTATCAGCCGTACTGGATCGAA GGGCCGATGCAGGTCAAGGCGTCCACCAGCGAGCTGGCCGATGCCGGTTATCGAATGGAGGCCGACCAGATTCTGGTGTACGAATTGCCTGATTCATAAG TGTGAGGGCTTCAGCGCGTTTTATTGAGCTGTGTCAAAGCCGCGTTCCAGACGCGCCGTAACATTGCACACAGACACCTTGAACCGCCTTTGGAGCCCCC
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| DNA Sequence for Gene |
>CFII64_04970
ATGAACAAGTCTTTGCTCAGCGCATCCCTCTTCGCGCTCGCACTCAGTGCCCCGCTCGTAGCCCAGGCTCACGAAGCAGGCGATATCATCGTCCGTGCCG GCGTCGCGCACGTTGAGCCAAACGAAGACAGCGGCGAGGTGAAACTCGACGGCACGAAAGTGTCCGGCACCAAAGCGACTCTGGATGGCGATAACCAGCT GGGTCTGACCTTCGCTTACATGCTGACCCCGCACATTGGCCTTGAGCTGTTGGCGGCATCGCCGTTCAACCACACCGTTTCGGTCAAGGGCCTTGGCCCG GGCCTGGATGGCAAACTGGCAGACGTCAAACAGCTGCCACCGACGTTATCGCTGCAGTACTACCCAATGGAACCGTCGTCGAAGTTCCAGCCGTACGCCG GTATCGGTATCAACTACACCACCTTCTTCGATGCGGACCTGACTGGCACGCGTAAAAGCGAAGGCTTCAGCAACCTCAAGCTGAAGGATTCGTTCGGTCT GGCGGGTCAAGTCGGTATGGACTACATGTTGACCGACAGAGTCATGCTCAACGCCTCGGTCTGGTACGTCGATATCGACACCAAAGCCAGCGTAGACGGC CCATCTGCCCTGAGCGTCGGCAAGACCAAAGTCAGCGTCGATGTCGATCCATGGGTTTACATGGTCGGCGTTGGTTACAAATTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCGACGGGGAAATCAGAAACAAAAAAAGCACCTTCACGGTGCTTTTTTTATGCCTGGATTCTGCCCCTGCCGCGAATCAACGCCCCAGCAGTTTTGC CAGGCCGACGGTCAACGGAGTCGGTTCATCGAGGATGAACCGGGCCAACAACCGCTGATTGTTGGCCCGGGAATGCTTGATGTCCCCGGAACGCGGGTCT TTGTAGGTGATTTCCGGCAGCTGGCCAACGACGTCGGACAAGGCACCCAGCAACTGATTGAGCGAGGTTGTCTTGTTCAGACCGACGTTGAATGCGCGCT CTTCAGGCTGAGGCATTTCCAGCGCCTGGGTCAGCAGCTTGACCAGATCGCCCACGTAGAAAAAGTCGCGCGTCTGTTCGCCATCGCCAAACACGGCAAT CGGCAGCCCCTTCTCGGCGCGCTCGGCAAAAATGCTGATCACCCCCGAGTAAGGCGACGATGGGTCCTGGCGCGGACCGAAGATATTGAAGAAGCGAAAA
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| Amino Acid Sequence |
>outer membrane protein W
MNKSLLSASLFALALSAPLVAQAHEAGDIIVRAGVAHVEPNEDSGEVKLDGTKVSGTKATLDGDNQLGLTFAYMLTPHIGLELLAASPFNHTVSVKGLGP GLDGKLADVKQLPPTLSLQYYPMEPSSKFQPYAGIGINYTTFFDADLTGTRKSEGFSNLKLKDSFGLAGQVGMDYMLTDRVMLNASVWYVDIDTKASVDG PSALSVGKTKVSVDVDPWVYMVGVGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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