Pseudomonas sp. CF149, CF149_17805

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CF149 soap_scaffs_149.Contig36, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACAAGTTCGTTCAGGCCCAGCGCGATCAGCTGACGCCAAAGATCAATGCCGGTGAAGCCAAGATTGCACCCCGCCATGCTGAGCGCGTGGCCGAAGCGCA GCGCCGTCTGGCCGCCGACACCGAAGAAGAACTGGCACGTCTGACCGCCCTGCAAGCGGTCAACCCAAGCGTTCGGGACAGCGAACTGGTTGCCTTGCGC AAGCAGCGTGAACAAAGCCTGGCCATGCTTGAAAAAGCAGCCTTGCGCCTTGAAGCCATTCGCGTGCTGGTAGCGGGTTAAAAACCCATGACCTGTGGGA GCGGGCTTGCTCGCTCCCACATTTCTGACCGTTCAGATATGACGTAACTGACTATAAACCACCGCCTTAATAACAAAATGATCACTATCATTTTGCCACT ACCCCTGCCTGCCTCAATCCAGCTTCTATACTTGATCCCAAGCTAGCAACTTTCGACTAGCACATCTGGATTGCCGAGGCGTGCAATGGAAAGGCTAGGG
DNA Sequence for Gene
>CF149_17805
TTGCAACTTCTGGGTGAGCCTTCAGATAACGCGCAACTGCTGTTGATCGGCGGCTACAGCCCCTATCTGGTCTTTCTCGCCTGGCTGGTTGCCTGTACTG CGTGCCTGGCCACGCTTAACCTGCTCGACCGCTGCGCCAATGCAGAAAAAGCAGCCGCTAAAAACGCTTGGCGATGGATCAGTGTCAGCTGCTTGGCGAC CGGTATCTGGGCCATGTACACCATCTGCCTGCTGGCGTTTGAATCCCCCCTCGAATCTCGTTACAGCCTGGCGGTGGGCGTTGGCTCACTGCTGACCGCC TTGATCGCAGCGTTGGTGATTGTGCAAGTGTTCAATCACATCACAACTTGGCGCTCAAGCACTGGTTTGCTGCATCAACTGTTCAAATATGGCCTGTGCA TGGCTGCGGCCGGGATTCTGCTCTGCGCTTGCTTCTTCAGCATGTCGGCATTCGGCGATACACCGGCGAGCCAGTCAGATGCCGACAGCAAGAACTGGCA ACTGGCTCTAGTGGTCGCCCTGATTGCGCTGTTGTTGATTGGTAGTTGCATCAGTGCCGCGATCGTCGACAAAAAGCTGCAACTCAAGGAGCACGACCTG AGACGGGTAAACGCCTTGCTCAGCCAACTCGACCAGGCGCGCGCCTCATTGCAGCAGGTAGCTCATTACGACCCTCTGACTAACTTGATCAATCGACGGG GTTTCAACCAGTTATTCGCAGAAAAGCTCATTGATTGCACCGCCAGAAACAGCAAGTTGGCCGTGATGTTTCTCGACATTGACCACTTCAAACGCATCAA TGACAGCCTGGGCCACGACGCGGGCGATGAACTGCTCAAGGTGATCGCGGCCCGCATCAAACATGCCACTCGCAGCCACGATGATGTCGTTGCGCGTTTC GGCGGTGACGAGTTCTGTATCTTGATCAACCTTAGCCACCACGATGAAGCGCAAAGCATGGGCCATCGCATCATGCTCAAATTGAAAGAGCCCATCGAGC TGTCTGGAAGACAGATGGTAATGACCACCAGCATTGGCATCAGTGTGTTTCCGCAAGACGGTATCACCAGCGCTGAGTTGCTCAAACATGCCGACCTGGC GCTTTACCAGTCAAAGGGCAACGGGCGTAACAATCTGACCTTTTTTAGCCCAAACCTTAAAACCCGTGCATCCCTTGAATTGCAGATAGAAGAAGAGCTG CGCAACGCGCTCAATGAAGACAAAGGACTGTTCCTGCATTACCAGCCCATCTTTGACTTAAAGAACGGCCGCGTCGCCAAACTCGAAGCTCTGGTGCGCT GGCAGCATCCCGAACACGGTTTGCTTGGCCCGGACCGCTTTATCAGCATCGCCGAGGCTAACGGGCTGATTGCCGAGCTGGACCATTGGGTGTTGCGCAA AGCCTGTCATGACCTCGCAGCCCTTTCCCGGCAGGGATGGCAGCATCTGGGGATTGCCGTGAATTGCTCGGCGCGCAATCTGGTGCGGGTGGAGCTGGCC GACGAAATCGAAAGCGCTCTGCGCACCTCGGGCATCGCTGCGCATCGACTGGAACTGGAAGTCACCGAAAACGCCCTGATGTGCAACTTGAGCAGCACCT CGCAGTTGTTACGTCAGATCCGGGCACTTGGCGTGTCGCTGTCCATTGACGATTTCGGTACCGGCTATTCATCTTTGGCCTACTTGAAGCGTCTACCGCT CAATACCTTGAAAATAGACCGCTCCTTTATCCAGGACATACCGACCTCCAGTCAGGACATGGAGATCGTCCAGGCCATTATCCTCATGGCCCACACCCTG CACTTGCAAGTAGTCACTGAAGGTGTAGAGACCACCCTGCAATTCGAATTCCTGAACCAGTTTGGTTGCGACTTTATCCAGGGCTATCTGCTCAGTCGCC CCGTTCCCTTCGAGGCGCTGCAAGAGATTCTCGAACAGCTCGACAAACGGCCGGTGCCTGCTGCGGATCACACCACGTTTGTACTCACCCGCCAGTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGCACAGCTGCCATCCACGCATAAAAAAACGCCACAGTACCAACTGTGGCGTTTCTCTACGGCAAATTGCCACTACCTGCAGCCGGGTTACTCAGCTAC ACACTCCGCGCTCGTCAAATCAGTGCAACTAAATGCTCCTGTTTGGTGCGCGCAGTTATTTTTGCGCCCTTTCCTGGACCATCACCCACGGCGAAACCAC TACAGCCCAGAGCTGCGGGTCCCGCTCAAGAACGTCTAGCGCCTGTGCCTCCGTCATCCTGCCAAGCACCCCGGACGCCATCCAGGCCGCGACTTTCTCT GCATCATCCTGAGTCACGGCCTGCGCCGCTTCGATCAAGTCCAGCTCTGGTTCAACCCACAGCAAATCACCTTTGGCGAAGAAGGGCTGCAAGGCTTTCC ATTCAATAGTTGAGGTCTCGCCAAGCAGCTTGGCATAGAGGGTGCTAGGTTCTTGATTCATGGGTTTCACCGGGGAAAAAAATCGGCGCCATGATAACGC
Amino Acid Sequence
>TPR repeat- GGDEF/EAL domain-containing signaling protein
MQLLGEPSDNAQLLLIGGYSPYLVFLAWLVACTACLATLNLLDRCANAEKAAAKNAWRWISVSCLATGIWAMYTICLLAFESPLESRYSLAVGVGSLLTA LIAALVIVQVFNHITTWRSSTGLLHQLFKYGLCMAAAGILLCACFFSMSAFGDTPASQSDADSKNWQLALVVALIALLLIGSCISAAIVDKKLQLKEHDL RRVNALLSQLDQARASLQQVAHYDPLTNLINRRGFNQLFAEKLIDCTARNSKLAVMFLDIDHFKRINDSLGHDAGDELLKVIAARIKHATRSHDDVVARF GGDEFCILINLSHHDEAQSMGHRIMLKLKEPIELSGRQMVMTTSIGISVFPQDGITSAELLKHADLALYQSKGNGRNNLTFFSPNLKTRASLELQIEEEL RNALNEDKGLFLHYQPIFDLKNGRVAKLEALVRWQHPEHGLLGPDRFISIAEANGLIAELDHWVLRKACHDLAALSRQGWQHLGIAVNCSARNLVRVELA DEIESALRTSGIAAHRLELEVTENALMCNLSSTSQLLRQIRALGVSLSIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIPTSSQDMEIVQAIILMAHTL HLQVVTEGVETTLQFEFLNQFGCDFIQGYLLSRPVPFEALQEILEQLDKRPVPAADHTTFVLTRQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site