Pseudomonas syringae BRIP39023, A988_16493
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF141452 | Hcp1-like | IPR036624 | Hcp1-like superfamily | 4 | 168 | 1.96E-42 |
| PANTHER | PTHR34319 | MAJOR EXPORTED PROTEIN | - | - | 1 | 163 | 4.4E-37 |
| NCBIfam | TIGR03344 | JCVI: type VI secretion system tube protein TssD/Hcp | IPR008514 | Type VI secretion system effector Hcp | 1 | 168 | 3.1E-62 |
| Pfam | PF05638 | Type VI secretion system effector, Hcp | IPR008514 | Type VI secretion system effector Hcp | 26 | 155 | 3.2E-36 |
| Gene3D | G3DSA:2.30.110.20 | - | IPR036624 | Hcp1-like superfamily | 2 | 171 | 1.8E-58 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.