Pseudomonas syringae BRIP39023, A988_07824
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 613 | 752 | 1.3E-17 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 231 | 304 | 9.6E-21 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 819 | 1274 | 1.6E-86 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 858 | 893 | 3.7E-6 |
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 59 | 147 | 4.8E-25 |
| PANTHER | PTHR32305 | - | - | - | 571 | 1277 | 4.3E-38 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1220 | 1240 | 6.6E-15 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1337 | 1356 | - |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 736 | 775 | 0.0031 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 677 | 713 | 1.0E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 643 | 672 | 6.5E-4 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1243 | 1262 | 6.6E-15 |
| Pfam | PF14412 | A nuclease family of the HNH/ENDO VII superfamily with conserved AHH | IPR032871 | AHH domain-containing protein | 1294 | 1377 | 4.4E-8 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 580 | 608 | 0.009 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 442 | 612 | 2.3E-18 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 526 | 565 | 1.5E-9 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 72 | 138 | 4.7E-18 |
| CDD | cd14742 | PAAR_RHS | - | - | 60 | 147 | 1.238E-38 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1199 | 1275 | 3.2E-27 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 526 | 562 | 7.9E-8 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1172 | 1205 | 2.7E-18 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 858 | 893 | 4.4E-5 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1166 | 1186 | 6.6E-15 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.