Pseudomonas veronii 1YdBTEX2, H736_RS0101555 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii 1YdBTEX2 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAGTATCCCGAAGACTCCGTCCTGGTTGACCTGAACCCCATACCCTCCACCGAACACCTCTTTAAGGGTATAGAGCGGGCTGGTCCCGATATCGCCAT AAACCACCCCGACCGCTGCCACCAGCATGCCAATCGGCTTGGCATTGGAATGCTCGGCACCCGCTGCCTGACTACTTGCCTGACCCATCAACCACTCCTG CCCTATACCTGAGGTCTCTTATAAACAACGCATCTAAGCGGACCTTAGCATGCGCTGTTTTACTTCTCGTAACAGACGTTTTGTTGACCCAAGGATTTCA CCCGTTCGCAACGGCGCGAAGCATAGCGCAGCACTCGTCGTATTTCCCTGCATAAAGCTGGTCAAGTGCGTTGCCCGTCGCTAGAATTGCGCACTTTTTG ATCAGAGGCACAAAAGCATGCTCTTTTACGAGCGCGCCAAGTGCCCGTCTACCGCCTTGTCGTACCCGACTGGCGGCGTCATTCAATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>H736_RS0101555
|rimO
ATGTCCACCACCATCGCAAAAGCCAACCCCAAGGTCGGCTTTGTTTCCCTGGGCTGCCCGAAGGCTCTGGTCGACTCCGAACGCATCCTGACGCAACTGC GCATGGAAGGTTATGACGTCGTGTCCACTTACCAGGACGCGGACGTGGTGGTGGTCAACACCTGTGGCTTCATCGACTCGGCCAAGGCGGAATCCCTGGA AGTGATCGGCGAGGCCATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGTATGGGTGTGGAAGAAGGCAATATCCGCAACGTACACCCGAGCGTGCTG GCCGTGACCGGTCCGCAGCAGTACGAGCAGGTGGTCAACGCCGTGCATCAAGTGGTGCCGCCGCGTCAGGACCACAACCCGCTGATCGACCTGGTGCCGC CGCAAGGCATCAAGCTGACCCCGCGCCACTACGCGTACCTGAAGATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTCAGCCGCCCGGTGGGCGATGTGCTGGACGAAGCCCAGCGCCTGGTCAAATCCGGCGTTAAAGAACTGCTGGTGATCTCCCAGGACACCAGC GCCTACGGCGTCGACGTGAAATACCGCACCGGCTTCTGGAACGGTGCGCCGGTGAAAACCCGCATGACCGAGCTGTGCGAAGCCCTCAGCAGCCTGGGCG TGTGGGTGCGCCTGCATTACGTGTACCCGTACCCGCACGTGGACGAGTTGATCCCGTTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTGCTCAAGGCCATGAAACGCCCGGCCTTCGAAGACAAGACCCTGGCGCGCATCAAGAACTGGCGCGAGATCTGCCCGGAA CTGATCATCCGTTCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAAGAAGACTTCCAGTACCTGCTCGACTGGCTGACCGAAGCCCAACTGGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTCGAAGGCGCCCCGGCCAACCTGCTGGACCTGGCCGTAGTACCGGATGACGTCAAGCAAGACCGTTGGGAGCGCTT CATGGCGCACCAGCAGGCGATCAGCTCGGCGCGCCTGCAACTGCGCATCGGCAAGGAAATCGAAGTGCTGATCGACGAAGTCGACGAGCAAGGCGCCGTA GGCCGCTGCTTCTTCGACGCGCCGGAAATCGACGGTAACGTGTTTATCGACGATGCCAGCGGTTTGAAGTCGGGTGACAAGGTCTGGTGTACGGTGACCG ATGCCGACGAATACGACCTGTGGGCCGAAAAGCGCGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCATCAGGCGCGGATAAAAAAGTGAAAAAGCCCTGCTTCTGGACAAGATGCGGGGCTTTTTTAGGTCTATCGTTTTGCCCATCGACACCGAACATCCA CAAAGGGCAGCGGGCATGCGTCAGCATTCGGTTATCCACACCCCTAAAACCAGCGACTACGCCGAGTTGGCGCGGATCTGGGAGGCGTCGGTGCGCGCCA CCCATGACTTTCTGCCGGACAGCTACATCACGCTGCTGAAAAACCTGGTGCTGACCCGCTACCTCGATGCGGTGATGCTGATCTGCACCAAGGACACGCG CCAGCGCATCACCGGGTTCGCCGGGGTGGCCGCGGGCAAGGTCGAGATGCTGTTCATCGACCCGCAGCACCGTAGCCAGGGCCTCGGCCGGCAATTGCTG CGTTACGCGATCGAGCGCATGAACGCCGATGAGCTGGACGTCAACGAACAGAACCCGCAGGCGCTGGGCTTTTACTTCAAGCAAGGCTTTGAAGTCATCG
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| Amino Acid Sequence |
>30S ribosomal protein S12 methylthiotransferase
MSTTIAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL AVTGPQQYEQVVNAVHQVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVKQDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDDASGLKSGDKVWCTVTDADEYDLWAEKRD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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