Pseudomonas veronii 1YdBTEX2, H736_RS0101555 (rimO)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0051539	4 iron, 4 sulfur cluster binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00919	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0005737	cytoplasm	ISM Inferred from Sequence Model Term mapped from: InterPro:SFLDF00274	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0018339	peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid	ISM Inferred from Sequence Model Term mapped from: InterPro:SFLDF00274	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0051536	iron-sulfur cluster binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00729	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003824	catalytic activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00729	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0035596	methylthiotransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00919	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006400	tRNA modification	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00089	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016740	transferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00089	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF18693	TRAM domain	IPR002792	TRAM domain	383	443	8.4E-21
NCBIfam	TIGR01125	JCVI: 30S ribosomal protein S12 methylthiotransferase RimO	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	11	441	0.0
Gene3D	G3DSA:3.80.30.20	tm_1862 like domain	IPR023404	Radical SAM, alpha/beta horseshoe	141	383	5.2E-70
SMART	SM00729	MiaB	IPR006638	Elp3/MiaA/NifB-like, radical SAM core domain	143	369	2.7E-51
FunFam	G3DSA:3.40.50.12160:FF:000002	Ribosomal protein S12 methylthiotransferase RimO	-	-	11	128	5.5E-54
SFLD	SFLDF00274	ribosomal protein S12 methylthiotransferase (RimO-like)	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	7	444	0.0
Pfam	PF04055	Radical SAM superfamily	IPR007197	Radical SAM	149	326	8.7E-28
FunFam	G3DSA:3.80.30.20:FF:000001	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2	-	-	141	383	1.2E-87
FunFam	G3DSA:2.40.50.140:FF:000060	Ribosomal protein S12 methylthiotransferase RimO	-	-	384	445	1.2E-23
SUPERFAMILY	SSF102114	Radical SAM enzymes	-	-	115	374	1.83E-52
Hamap	MF_01865	Ribosomal protein S12 methylthiotransferase RimO [rimO].	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	10	444	60.992241
Gene3D	G3DSA:3.40.50.12160	-	IPR038135	Methylthiotransferase, N-terminal domain superfamily	11	128	1.8E-27
Pfam	PF00919	Uncharacterized protein family UPF0004	IPR013848	Methylthiotransferase, N-terminal	11	96	1.1E-20
NCBIfam	TIGR00089	JCVI: MiaB/RimO family radical SAM methylthiotransferase	IPR005839	Methylthiotransferase	11	442	4.4E-99
PANTHER	PTHR43837	RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO	IPR005840	Ribosomal protein uS12 methylthiotransferase RimO	7	443	0.0
CDD	cd01335	Radical_SAM	-	-	147	359	7.31731E-12
SFLD	SFLDS00029	Radical SAM	IPR007197	Radical SAM	7	444	0.0
SFLD	SFLDG01082	B12-binding domain containing	-	-	95	355	7.0E-28
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	384	445	1.0E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.