Pseudomonas taeanensis MS-3, TMS3_RS0108005
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGGCCTATTGGAACTGCTGGTTTTCGGCAGTTTCCTAACTGAGAGGAAGCCCACATGGCACTCAGCGTTGAAGAAAAAGCTCAGATCGTTAACGACTA TAAGCAAGCTGAAGGCGACACTGGTTCGCCGGAAGTGCAAGTTGCCCTGTTGTCCATCAACATCAACAAGCTGCAAGGTCACTTCAAGGCCAACGGTAAG GACCACCACTCGCGTCGTGGCCTGATCCGTATGGTTAACCAGCGTCGCAAGCTGCTGGATTACCTGAAGAGCAAGGACGTTAGTCGTTACAGCGCCCTGA TCGGTCGCCTGGGTCTGCGTCGCTAAGCAATGCTTACGCGAAGCTGAATGCCGAAGCTGGAAGTGGGGTTTATCCCTGCTTCCAGCTTTTGCCTTTCAGT CACACGCGTTTTGGACGGCTGCGGGTTCGACTCCCGCTGTTGCCCACGAATTCTGCAAGAAACAGCTTTCCCCAAAGGCAATGAAGAGAAGGAAAACACC
|
|
| DNA Sequence for Gene |
>TMS3_RS0108005
GTGAACCCGGTCATCAAGAAATTCCAGTTCGGTCAGTCGACCGTTACCCTCGAGACAGGCCGTATCGCCCGTCAAGCCTCCGGCGCAGTGCTGGTCACCG TTGACGACGACGTCGCCGTACTGGTCGCCGTTACTGGCGCCAAGACTGCCGACCCGAGCAAGGGCTTTTTCCCGCTGTCGGTGCACTACCAGGAAAAAAC CTACGCAGCCGGCAAGATTCCCGGTGGTTTCTTCAAGCGTGAAGCGCGTCCTTCTGAGAAAGAGACCCTGACTTCGCGCCTGATCGACCGTCCGATCCGT CCGCTGTTTCCAGAAGGCTTCCAGAACGAAGTGCAGGTTATCTGCACCGTGATCTCCACCAGCAAGAAGACCGACCCGGACGTCGCTGCGATGATCGGTA CTTCGGCAGCCCTGGCCATTTCCGGTATTCCGTTCAACGGCCCTATCGGTGCTGCGCGCGTCGCCTTTCACCCGGAAACCGGCTACCTGCTGAACCCGAA TTACGAGCAGCTCAAGGCTTCCAGCCTGGACATGGTCGTAGCCGGTACCAAAGACGCTGTGCTGATGGTTGAGTCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTCGGTGCCGTGCTGTTTGCCCACGACGAATTCCAGGTCGTGATCCAGGCCATTACCGAGCTGGCTGCCGAAGCCGCCAAGCCGACCTGGGACT GGCAGCCCAAGCCCGAGAACACTGCCCTGCTCAACGCTATTCGCGGCGAGTTCGGCGAGGCCATCTCCCAGGCTTACACCATCACCGTCAAGCATGAGCG TTATGCCCGTCTGGGTGAGCTGCGCAATGAAATCGTCGCCAAGTTCGCAGGCGAAGAAGGCCAGCCGACTGCCGGTGAAGTCAAAGAGGTGTTTGGCGAG ATCGAATACCGCACCGTGCGTGAGAACATCGTCAACGGCAAGCCGCGTATCGATGGCCGTGATACCCGTACCGTCCGCGGTCTGAACATCGAAGTTGGGG TGCTGGACAAGACCCACGGTTCTGCATTGTTCACCCGTGGCGAAACCCAGGCCCTGGTGGTTGCCACTCTCGGCACCGCACGTGACGCGCAGCTGCTCGA CACCCTGGAAGGCGAGCGCAAAGACCCCTTCATGCTGCACTACAACTTCCCACCATACTCGGTCGGTGAGTGTGGTCGCATGGGCGCTACTGGCCGCCGC GAAATCGGTCACGGCCGTCTGGCTCGTCGCTCCATCGCAGCCATGCTGCCAAGCGCCGATGTGTTCCCGTACACCATTCGCGTGGTTTCGGAAATCACCG AGTCCAACGGTTCCAGCTCCATGGCTTCGGTCTGCGGCGCTTCCCTCGCTCTGATGGACGCTGGCGTGCCAATGAAGGCACCGGTTGCCGGTATCGCCAT GGGTCTGGTTAAAGAAGGCGAGAAGTTTGCCGTTCTGACCGACATCCTCGGTGACGAAGATCACCTCGGTGACATGGACTTCAAGGTAGCCGGTACTGAC AAGGGCGTTACCGCTCTGCAAATGGATATCAAGATCCAGGGCATCACCGAAGAAATCATGGAAATCGCTCTGGGCCAGGCCCTGGAAGCGCGCCTGAATA TCCTCGGCCAGATGAACCAGGTCATCGCCCAGTCGCGTACCGAGCTGTCGGCCAACGCCCCGACCATGATCGCGATGAAGATCGATCAGGACAAGATTCG CGACGTGATCGGCAAAGGTGGCGCGACCATCCGTGCCATCTGCGAAGAGACCAAAGCGTCCATCGATATCGAAGACGACGGTACCATCAAGATCTTCGGC GAAACCAAGGAAGCGGCTGAGGCAGCACGCCAGCGCGTTCTGGGTATCACCGCAGAGGCCGAAATCGGCAAGATCTACGTCGGTAAAGTTGAGCGTATCG TCGACTTCGGCGCCTTCGTTAACATCCTGCCGGGCAAGGACGGTCTGGTGCACATCTCGATGCTGAGCGATCAGCGTGTCGAGAAAGTCACCGACATCCT CAAAGAAGGCCAGGAAGTGAAGGTTCTGGTACTGGACGTGGACAACCGTGGCCGTATCAAGCTGTCGATCAAAGATGTAGCGGCAGCCGAAGCCTCAGGC GTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAACGCCTGCACTTCAGTTGTAGAGAAAAGGGCCCCTCGGGGCCCTTTTTTGTTTGGCTTTTGGCATCTGCGACAGCGGAAATATGGCTAAAGCGCTCGG CCGTACGCCCAAACCTTCTCGCTGCATTAATAAGCCAGCGAGGGCCTGTGAAATGCCTTATTGGCCTGAGTTACAGGGTGGATGGAGCCTGGGCCAGGTG AATGCATCGTTGGGACGGTGAGCTTGTCGTGATGGCGTTCTGCCTCTTGCAATTTGCCTGAAGCAATTCGCTCGAGCATGCAGTTTGCATGAGCAGTGTG ATTTTTTATATTGGTTAAGTTGTTGATAAATATAAGGATAAATTTTTTGTTTGGGTTGGCATAGGGCTTGCGACAGTAGTCTCGAGACTGCAGCCGGGAA CGGGCTTGCAGATAATCTGCAACGTACAGGAGTCGATAGCCATGAAACAGTCAATCAACAAGTTTGCCTTTGCCGCAATCACTGCAACCGCCCTCAGCCT
|
|
| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVAVLVAVTGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIR PLFPEGFQNEVQVICTVISTSKKTDPDVAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEAKELTED QMLGAVLFAHDEFQVVIQAITELAAEAAKPTWDWQPKPENTALLNAIRGEFGEAISQAYTITVKHERYARLGELRNEIVAKFAGEEGQPTAGEVKEVFGE IEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKDPFMLHYNFPPYSVGECGRMGATGRR EIGHGRLARRSIAAMLPSADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTD KGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQVIAQSRTELSANAPTMIAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGTIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRVEKVTDILKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|