Pseudomonas taeanensis MS-3, TMS3_RS0108005

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11252
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11252
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd11364 RNase_PH_PNPase_2 - - 324 545 0.0
PANTHER PTHR11252 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE IPR012162 Polyribonucleotide nucleotidyltransferase 3 695 0.0
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 620 691 2.4E-16
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 147 211 1.6E-11
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 294 489 3.69E-49
SUPERFAMILY SSF54791 Eukaryotic type KH-domain (KH-domain type I) IPR036612 K Homology domain, type 1 superfamily 556 641 1.58E-24
SMART SM00322 kh_6 IPR004087 K Homology domain 553 618 4.6E-14
FunFam G3DSA:2.40.50.140:FF:000023 Polyribonucleotide nucleotidyltransferase - - 623 693 1.1E-32
CDD cd11363 RNase_PH_PNPase_1 - - 5 234 1.86693E-118
FunFam G3DSA:3.30.230.70:FF:000001 Polyribonucleotide nucleotidyltransferase - - 2 235 1.9E-101
Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. IPR012162 Polyribonucleotide nucleotidyltransferase 2 694 29.964802
Pfam PF00013 KH domain IPR004088 K Homology domain, type 1 559 613 9.7E-13
FunFam G3DSA:3.30.230.70:FF:000002 Polyribonucleotide nucleotidyltransferase - - 237 550 0.0
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 145 237 2.52E-28
Gene3D G3DSA:3.30.1370.10 K Homology domain, type 1 IPR036612 K Homology domain, type 1 superfamily 551 622 1.3E-28
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 15 144 7.9E-19
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 615 693 9.7E-22
PIRSF PIRSF005499 PNPase IPR012162 Polyribonucleotide nucleotidyltransferase 1 700 0.0
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 236 550 0.0
FunFam G3DSA:3.30.1370.10:FF:000001 Polyribonucleotide nucleotidyltransferase - - 551 619 4.2E-25
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 325 457 1.5E-20
CDD cd04472 S1_PNPase - - 623 690 1.5127E-34
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 451 549 1.08E-28
CDD cd02393 KH-I_PNPase - - 552 621 2.16065E-28
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 1 235 3.6E-82
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 621 691 8.3E-24
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 3 144 2.83E-46
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 460 529 9.4E-6
Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain 243 321 2.7E-23
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 623 694 5.2E-26
NCBIfam TIGR03591 JCVI: polyribonucleotide nucleotidyltransferase IPR012162 Polyribonucleotide nucleotidyltransferase 9 692 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.