Pseudomonas pelagia CL-AP6, K787_RS0118370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd04784
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd04784
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046872 metal ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd04784
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00422 merrmega3 IPR000551 MerR-type HTH domain 1 70 3.8E-27
CDD cd04784 HTH_CadR-PbrR IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 6.51595E-65
PANTHER PTHR30204 REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR IPR047057 MerR transcriptional regulator 1 112 5.8E-24
SUPERFAMILY SSF46955 Putative DNA-binding domain IPR009061 Putative DNA-binding domain superfamily 1 119 5.13E-35
Pfam PF13411 MerR HTH family regulatory protein IPR000551 MerR-type HTH domain 1 68 4.9E-21
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 2 13 1.0E-10
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 37 57 1.0E-10
Gene3D G3DSA:1.10.1660.10 - - - 1 125 7.1E-33
NCBIfam TIGR02047 JCVI: Cd(II)/Pb(II)-responsive transcriptional regulator IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 8.0E-60
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 13 26 1.0E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.