Pseudomonas pelagia CL-AP6, K787_RS0100515
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGCTAGGCGAGGCGGATGATCTGGTTAACATCGTTCTAGGCACTCACCATATCCGCGCTACTACCGGCGATTTTACCTTCACTTCCAAGTTGGTCGA TGGCAAGTTTCCTGACTATGAGCGCGTGCTACCGCGAGGTGGCGATAAGATCGTGCTTGCCGATCGTCAGGTTTTGCGTAATGCATTCAGTCGGACAGCG ATTCTGTCGAACGAAAAGTATCGCGGTATTCGCTTGATGCTCAGCGATGCCCTGTTGAAAATTCAGGCCAATAATCCTGAGCAGGAAGAGGCTGTAGAAG ACATTGCTGTTGAATACAGCGGCAGTGAGCTTGAGATTGGCTTTAATGTGAGCTATCTCCTGGACGTGATGAGCGTACTGGGCAGTGAGCAGGTTAAATT GATTTTATCCGATGCCAATAGTAGCGCCCTGGTACAGGAAGCTGATTCTGATGACAGCGTCTATGTTGTCATGCCAATGCGTCTCTAAGTTTGTTCGTTA
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| DNA Sequence for Gene |
>K787_RS0100515
ATGCCGCTTAAGAAGCTGTCTGTCACCGCGGTGCGCAATTTGCACCCGGTGACTATCTTCCCCTCCCCCCGCATTAATCTCATTTACGGCGATAACGGCA GCGGCAAGACCAGCCTGTTGGAAGCTATTCATATCCTTGGGTTGGCCCGCTCTTTTCGCAGCACGCGACTGCACCCGGTTATTCAACATGAGCATCAGTC TTGCACTGTGTTCGCGGAGATTGAATTGGATAGCGGACTGCATACCTCAATGGGCATCACTCGTAGTAAGCAAGCCGATTACCAGATCCGAATTGATGGG CAGACTATACGCAGTACAGCTCAATTGGCTGACACGCTACCCTTGCAATTGATCAATCCGGATAGCTTTCGCTTACTGGAGGGTGCGCCGAAACAGCGGC GGCAATATCTCGATTGGGGTGTGTTCCACGTGGAACATCAGTTCCTGAGTACCTGGCAGCGTTTGCAAAAAAGCCTCAAGCAACGGAATTCACTGCTCCG ACGTGGTAGAATCGAACGTTCGCTAATAGCCCCGTGGGAAGCCGAGCTAGTAGATGCAAGCGAGCGTATAGACGAGTACCGCAGAGCCTACCTGCTCAAG CTCAAGCCCGTGTTCGAGTCAGTACTGGCGCAGTTGATTGATCTTGACGATCTCACCCTCAGTTATTTTCGTGGGTGGGACAAAGATCGTGGCCTGCAGG CCGTGATCGACTCGCAGTTCGAGCGAGACTGCCAGTTGGGTCATACCCAGGCGGGCCCGCAAAGAGCTGATTTGAGGTTAAGGATCAAGGGGATGAATGC TGCTGAAGTGTTATCCCGCGGGCAGCAGAAGTTGGTCGTATGTGCCCTGAAGATAGCCCAAGGGCACCTATTAAAGGAGCGTGGTCGCCAGCAGGACTGC ATTTTCCTGGTGGATGATTTGCCTTCCGAGTTAGACGAGCAGCACCGTAATGCCCTGTGCCGGCTGTTAGAAGCCCTCGATTGTCAGGTGTTTATTACGG GTGTAGAAGCAGAACAGCTGGCGAATTGCTGGCAAACCGAAACATCCTTGTCGATGTTCCACGTGGAACATGGGCACATTGTGCAGACCGAACGCTGTCT GGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGAATATGACCGAAAATAGAGCCTATGATTCATCCAGTATCAAGGTACTTAAAGGCCTTGATGCCGTGCGGAAACGCCCCGGCATGTACATCGGTGAC ACGGACGACGGTACCGGTCTGCACCACATGGTGTTCGAGGTAGTTGATAACTCAATCGACGAGGCGCTCGCCGGTCACTGCACCGACATCAGCATTGTCA TGCACACCGATGAATCCATTACTGTTAGAGATAATGGCCGGGGCATCCCCGTCGATATGCACGAGGAAGGTGTTTCTGCGGCAGAGGTCATCATGACCGT ACTGCATGCCGGTGGCAAATTCGACGATAACAGCTACAAGGTGTCGGGTGGTCTGCACGGTGTGGGTGTTTCAGTGGTCAACGCGCTGTCTGAAGAGCTC ATCTTGACCATTCGCAGGGCCGGTAAAGTATGGGAGCAGACCTATAGCCACGGCGTGCCCCAGCAGCCCCTGAGAGAGGTGGGTGACACTGACACCAGCG
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| Amino Acid Sequence |
>recombinase RecF
MPLKKLSVTAVRNLHPVTIFPSPRINLIYGDNGSGKTSLLEAIHILGLARSFRSTRLHPVIQHEHQSCTVFAEIELDSGLHTSMGITRSKQADYQIRIDG QTIRSTAQLADTLPLQLINPDSFRLLEGAPKQRRQYLDWGVFHVEHQFLSTWQRLQKSLKQRNSLLRRGRIERSLIAPWEAELVDASERIDEYRRAYLLK LKPVFESVLAQLIDLDDLTLSYFRGWDKDRGLQAVIDSQFERDCQLGHTQAGPQRADLRLRIKGMNAAEVLSRGQQKLVVCALKIAQGHLLKERGRQQDC IFLVDDLPSELDEQHRNALCRLLEALDCQVFITGVEAEQLANCWQTETSLSMFHVEHGHIVQTERCLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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