Pseudomonas putida S610, EDP1_2096
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1753, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAGGTGTTTGCCGCTGGCATGGCCGAATGGCTCAGCAGTGCGGCCGGGCTGCCGGTGCGCCTGGCGCGCGAAGGCGAGCCACCGCAACCGGGGCAGGT GCTGTTGGCCGGCACCAACCACCATCTGCGTCTGCTACAGAACGGGCAACTGGCCTACACTGCCGAACCGGTCAATGAAATCTACCGCCCCTCCATCGAC GTCTTTTTCGAAAGCGTGGCCCGCTACTGGTCAGGCGAGGCAGTAGGGGTACTGCTCACCGGCATGGGACGCGACGGCGCACAGGGGCTCAAGATGATGC GCCAACGGGGTTTTCTGACCATTGCCCAGGACCAGGCGAGCAGTGCTGTCTATGGCATGCCCAAGGCTGCTGCAGCGATCGATGCCGCAGTGGAAATCCG CCCGCTTGAAGGCATAGCCGGGCGTCTGACGGAAGTTTTTGCACAATGACGAAGCGTAACGAATCATGCCGCCTGGCCGGCAGTGTTCAGGTGAACAGCC
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| DNA Sequence for Gene |
>EDP1_2096
ATGAATGAGCTCCCCATCGAAGGCTTCGCCGCCGCCGATGAAAATTCGGCGATGGTGCTGCTGGTGGACGATCAGGCCATGATCGGCGAAGCCGTGCGGC GGGGCCTGGCCCATGAAGACAACATCGATTTTCATTTTTGCGCAGACCCGCACCAGGCGGTGCAGCAGGCCATGCGCATCAAACCCACGGTGATCCTGCA GGACCTGATCATGCCCGGGCTCGATGGCCTGACGCTGGTGCGTGAGTACCGCAGCAACCCGGCCACCCAGGACATCCCGATCATCGTGCTGTCGACCAAG GAAGACCCGCTGGTCAAGCGCGCCGCGTTCGCGGCCGGTGCCAATGATTATCTGGTCAAGCTGCCCGATACCATCGAGCTGGTGGCGCGCATTCGCTATC ACTCGCGTTCCTACTTGACCTTGCTGCAGCGCGACGAGGCTTACCGCGCCCTGCGGGTCAGCCAGCAGCAGTTGCTCGATTCGAACCTGATGCTGCAACG GCTGATGAACTCCGACGGCTTGACGGGCCTGTCCAATCGACGCCATTTCGATGAATACCTGGAGCTTGAGTGGCGACGGGCGATGCGCGAGCAGCAACAG TTGTCGCTGTTGATGATCGACGTCGATTATTTCAAGGCCTATAACGACACCTTTGGCCACCTGGCCGGAGACGAAGCGTTGCGGCGTGTGGCCGAGGCCA TCCGTGGTTCATGCTCGCGGCCCAGCGACCTTCCGGCCCGCTACGGCGGTGAGGAGTTCGCCCTGGTGTTGCCCAACACCTCCCCAGGTGGCGCCAGGCT GGTTGCCGAGAAACTGCGCCAGAGCGTGCTGGGCCTGGCGATCGAGCACACGGCGCCGGCTGCTGGGTCGCACCTGACCGTGAGCGTGGGCCTGGCCACG CAGGTTCCCGCTATCGGCAGCCACTGTCGGCAATTGATCTCGGCGGCGGACAAGGGGCTGTACCAAGCCAAGAACGGCGGCCGCAACCAGGTGGGGGTCG CCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCACTGGACGAGGGTGCTTCTTGCAACCGCCTGCACCCGGCGTCTGGTTGTCGATGCCTGCCAGGCGGGTCTGCCGCCACGCGGCCGACTCGGTTATAC TCGCAGGCTTTTCACCGAATTCGCACGAGTAGCCTGCCCATGGAAATCCAACCGATCCTGAACACCATCAAGGACCTCTCCGACCGCTCCCAGTCCATTC GGGGGTATCTTTGACTACGATCTCAAGCATGACCGCCTGATCGAAGTCAATCGCGAGCTGGAAGACCCCAACGTCTGGAACAAGCCCGAGTACGCCCAGG CCCTGGGCCGTGAGCGGTCCATGCTGGCGCAGGTCGTCGAGACGCTGGACAAGCTGTCCAACGGCCTGGCCGATTGCAAGGACCTGCTGGACATGGCCGT CGAAGAGGGCGACGAAGGCGCTGTCGGCGACGTCGTGACCGAACTGCAAGGCCTGGAAGAAAACCTGGCCCAGCTCGAGTTCCATCGCATGTTCAGCGGC
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| Amino Acid Sequence |
>diguanylate cyclase domain protein
MNELPIEGFAAADENSAMVLLVDDQAMIGEAVRRGLAHEDNIDFHFCADPHQAVQQAMRIKPTVILQDLIMPGLDGLTLVREYRSNPATQDIPIIVLSTK EDPLVKRAAFAAGANDYLVKLPDTIELVARIRYHSRSYLTLLQRDEAYRALRVSQQQLLDSNLMLQRLMNSDGLTGLSNRRHFDEYLELEWRRAMREQQQ LSLLMIDVDYFKAYNDTFGHLAGDEALRRVAEAIRGSCSRPSDLPARYGGEEFALVLPNTSPGGARLVAEKLRQSVLGLAIEHTAPAAGSHLTVSVGLAT QVPAIGSHCRQLISAADKGLYQAKNGGRNQVGVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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