Pseudomonas fluorescens R124, I1A_001649

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAGCTTTTATGGGCACATTCTGACGTTTCGCGGGGTTGGCCTGGGTGCCCGCGAAGAGGGTGTGCGGCTATTGCGTCTGGCGGCACTCGCCGGCGATGGC AAAGCGGCCTATCAGGTCGGTGTGATCAGTCTTGCAGGCACCCCGAGCAAGGGGCCGGATCCAGCAGAGGCTGCGCGCTGGTGGACTTTGGCCGCCAAGG CCGGCCACCCGTTGGCCGAACTCAAACTCAAAGAATTGAGCGCTCGCGATTAAACCCAGTAAATCCATTTGTGTCGGCCCGATAAACGTGGCGTGAGGGA AACCTCACGCCACGTTTACGTTTATAGCTATACGTTTTGTAGTAACTGGTTTTTTACAGATTAGTCCTACAGCAAACGCCTACTCGCCTGACTTCTTTCC TGGCTGATCCCCCGCAAAGTCCCCGCGCCTAATTTCTGCGCGAGGGAACGCTCATGTTTGACCCGGTTTTTCATTCCACCCCGCATCGTCGTGTGCGCTG
DNA Sequence for Gene
>I1A_001649
ATGGACGCCGTCAGCCGCATCGAGCAGGAACTCGACAGCTTCCCCGACACCCTCGACCTCTATCGCCAACAACTTGAGCATTGGTTGAGTCGCGCGGCCG ACCAGGTCAGCCACGCGGCCGACCTGCCGTCGCTGATGGGCATGGAGCGGATCATTCGCTTCGGCGATCGCGTCACCGCCGTCAGCACCGGCGACAGTGA GTTTTCCTCCAGCGTCGTGCAGTGCCCGAAGAGCGGAGTGCTGGCGATCGAGAGCAAGTTCGAGTCGGTGTACGACATTCCGCTGGGCGACATCGTGGTG GATGTGGTGGCGGTGGATGATGGAAAAACCTCCCCCGTGGCACTGGATGCGCAAGGCCGGGGCACCTTCACCGGTACGCCAGGCAAGTTCTATCGCGTGC AGGTGCACAGCGAGGTTACCCCGGAGCAGATCAAGGCGCTGTTCAAGTCCTACGACGGCTTGACCGGTGAGCTGGATGGCTGGCTGCGCAGCGAGTGGCA GGGGTTCAAGCCGCAGTGGTCGCAGTCGGTGGCGACAGCCGCGAGCAACGGCATGCTCGCCGGGAGTTGGGCGGCGATCGAGGGGGTGTGGGACAGCATC GGGATGCTGTCGGACATTCTCAAGGATCCAGGCGCATTTGCCGAGCGGCTGGGAAGCGGCGCGGCTGATCTGATCCGGCTCGCAGAATCAGCTCCGGATG TCATGCAGAAACTGCAGTTGCTGGTCAGTGATGAAGCGGCGCTGTGTTTGCTGTTGCGTGCGGCGAGCCTCTGGTTCGAGATGCTGCCGCCCAGCCAGAT CGCCGGCAAAACCGCTGAAACGGCGTCAATGATGATCGTGCAGGTGCTGATCGATGTGTTGATCGGCGTTGTGTTGACATTCGTCGGGGCTGGCGCAGGG ATCGCTTATCTGACCCTGCGCCTGGCGGACCGCGCGGCCCAGTTGCTGTCGGTTGTAAAGCGCCTGGTCAAGGCGATTTTCGGCATCGTCAACACGTTCA TCCATTACGTCGACCAGTACAAAACCGTTGCCGCGCGGGGTATTGCCGCCGGCGTGAAAAAGGGGCGCATGCAATTGCGCTGGAATGCGAAGCGCAATGC CGCCCTGAAGAAAAACGAGCACCACGATAACGCTCCCGATCAAGCGAAAAACCCCAACGGCGACAGCGCCGATTGCGCGCCGCTGACCTGCACCAACGGC TGTCCGGTGTCGATGGTCACCGGCGAAGAACTGCTGACCCTGAGCGATGGCACGCTCGATGGTTTGCTGCCGTTCGAGTTCACCCGGTTGTACCGCACCA GCGCGGTGGAGATCGATGTCGGGCTGGGGTTTGGCTGGAGTCATTCGCTGGCGCATCGGCTGGAGTTTGATGGCGATGTGGTGGTCTGGGTCGATCACGA GAACCGCCGCACGCGGTTTCCGTTGCCCAGCGTTGAACGGCCGCAGATTCACAACAGCCTGTCGCGGGCGGCGATTTTTCTCGGGAATGAGCCGGAGGAA CTGATCCTCGCGCTGGCGGGGGAAACGGCGCGGTTTTATCACTTTCGGGCTGGGCGGCTGACGGCGGTCAGTGATGCGTATGGCAATCGTCTGACCGTAC AGCGCGATTATTCCGACCGCGTGCAGCGCCTGGATAACGGCGCAGGTCGCTCGCTGTTTTTGCGCTACGACCAGGCGCGTCTGGTAGCGGTGGATTACCA GGTGCTTGGGGGCGATGGCTGGCGCACCGAGCAAACGTTGGTCAGTTATTGCTACGACGCCCGCCAGCGTTTGTTGGCCGCGACCAACGCCGTCGGTGAC AGCGAGCGTTACGACTACGACGATCAGCACGTCATCCTGCAGCGGCAACTGACCGGCGGCGCGAGTTTCTTCTGGGAGTGGGAGCGTGCCGGCAAAGCGG CGCGCTGCGTGCGGCACTGGGCGTCGTTCTCGCAGATGGACACGCGGTATGTCTGGGACGACGACGGCCGTGTCGCGGTGCATTACGTCGATGGCACCGA AGAGGTTTACGTCCACGATGACAGCGCACGGCTGGTGCGTAAGGTCGAGGCCGATGGCGGTGAGCACCTCAAGGCCTATGACGATCAGGGTCGGCTGATC GCCGAGCAGGACGCGCTCGGTGCGGTCACCGAATACCGCTACGACGACGTCGGACGGCTGATCGCGCTGCTTCCGCCGGAAGACGAGCCAACGTCCTACG AGTACCGCAACGGTTTCCTGCACAGCCGTTCTCGCGGTGAGGCGGTGTGGACATTCCGGCGCAACGCTGAAGGGGATGTCACCGAAGCAGTCGATCCCGA CGGCCAGGTCACCCATTACTACTACAACGTTCGCGGGCAGTTGCTGTCGATCCGCTATCCGGACACCAGTCGGCACATTTTTGTCTGGAACGATCTCGGC CAACTGATCGAAGAAACCCTGCCCGCTGGCGGTGTGCGGCGTTTTTCCTACGATGCGCTGGGACGGCGGACGACCTCTTGCGACGAGCACGGCGCGATTA GCCGTCAGCAGTGGGATGCGGCTGGCCGACTGGTTCAGACGACCTTTCCTACAGGTGCCACCCGCGCCTACAGCTACGGCGCTTATGGCCAGGTTACTGC CGAGCGCGACGAACTCGGGCGCATCACCCGCTACGAGTATGACGATGACCTGCACCTGGTCTCGCGCAAGATCAATCCCGACGGCACGCGGGTGCAATAC CGCTACGACCATGCGCAACTGCTGCTCACGGAAATCGAGAACGAGTCCGGGGAAAAGTACCGACTGGACTACACGCCGAGCGGATTGATCCGACAGGAAA CCGGCTTCGACGGCCGGCGCACCGCCTACGCCTACGATCGTAATGGGCACCTGCTGGAGAAGACCGAGTTCGGCGATGACGGCTCAACGCTGGTCACCGC TTACCAGCGTGATGCGGCCGGGCGTCTGCTGCTGAAAACCCTGCCCGACGGGGTTCAGGTGGCTTACCGCTACGATCGCCTGGGGCGGTTGATCGGTGTC GATGACGGCCAGAAACATCCACTGGCCTTCGCATACGATCTGCAAGACCGGCTGATCACCGAGCATCAGGGCTGGGGCACTTTGCGGTATGCCTATGACG CCTGTGGCCAGCTCAAGCGCCAGCGTCTGCCGGACAACAGCAAGCTCGATTATCACTACGCCAAGGGCGGTGCGCTGACCGCCATCGACCTCAATGGCGC ACGGCTGACCAGCCATGTCTACCAGTGCGGTCGCGAACAACAACGCCAGCAAGGCCTGCTGCTCAGCGACTATGCCTACGACGATCAGGGCCGTTTGCTG GCCCACGTTGTAGGCCATCAGCACACGTCGCTATACCGCCGCGACTATGCCTACAGCGCCAACGGCAATCTGGAGCACATTGCCGACAGCCGTCACGGCC AGCGCACCTACGCCTACGACGCCCTCGACCGCTTGATCCGCGTGCGCCACTCGCGTGACGAACTGCCCGAGTCCTTCACCCACGACCCGGCCGGCAACCT GCTGATGCAGGATCGCCCCGGTCCCACCCGGATCAAGGGCAACCGCCTGCTGATGCAAGGCGACCGACACTACGACTACGACGCCTTTGGTAACCTGATC CGCGAGCGTCGTGGCCGCGACCAGCAACTCGTCACCGAGTACCGCTACGACTGCCAACACCGCCTGATCAGCCTGACCCGCCCCGACGGCCAAACCGCGA CCTATCAATACGACGCCTTCGGCCGACGCATCCGCAAAACCGTCGACGGCGTCAGCACCGAGTTCTTCTGGCAAGGCGACCACCTCGTCGCCGAGAGCAG CAAAACCCACCACCGCAGCTACGTCTACGAACCCGGCACCTTCCGGCCGCTAGCGCTGCTCGACGGCAAAGGCCCGAAACTCGCCTGCCCGTTCTACTAC CAACTCGACCACCTCGGCACCCCGCAAGAACTCACCGACTACAGCGGCGAAATCGTCTGGTCGGCGCAGTACGACGCCTACGGCAAAGTCGCGGCGATCA CCCTCGCCGGCGAGGACTACCTAGACCAGCCGCTGCGTTTTCAGGGGCAGTATTTCGACGCGGAAAGTGGGCTGCATTACAACCGGCATCGGTATTACGA CCCGCGGTTGGGGCGGTATCTGACGCCGGATCCCATCAAGTTGGCGGGTGGGTTGAATCAGTACCGGTACGTGCCGAATCCGACGGGGTGGGTGGATCCG TTGGGGTTGAGCTCGAACTGTCCGCCGCCGAATAGGCCGGGTTGTGCGGTGCCGGATGGGGTGGGCGGTTCGGCTGTTGATGAAGGCGAGCCACAGCTGC CGCGAATGACAGCGCAGGAACAGCGGGCGAAGATTGATGAGTTGGCAGAGGCGAATGCGAAGAGGCGAGTGAATGAATACGAGTCTTCATACCAAATGCA TACTGTCGCTAAACATAATCCGGAAATTCCGGATCACGCGCTCAAGCAAAGATCCATTGATGGCAGTCATCCCACAATAAGTGGAGCACGGGAGAGGGTA AATTCGAGCTCTCAGTTCAAGAGTTGGCGGCTACAGCTCCATGCTATCAACGACGCTGTTTCCAGAATGAACCGAACTCCCCCTGCTCCTACAGGATTTA CATCACAAGGGGACCCGGTGGTGAGGAAAGAGATGCCGAATGGTGGCAGAGGATATAAGCCCAATAGAAGAGATCAACAAAATCCACGATATGTAGATGA GTTGAATTATTCTGAAGTGCGGTTTCGCAGACAAAATATTAATAGCCCTTACACAGCTTTCCCGGATTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAGTGTTTTATGTTGATGTCGCCGGGAGTGAATCTTCCGTTTACTCCCCAGCTTTCTTATTGGCTTGGTGGGATAGGAACCTATGATCGGGAGGAAACAT TGGGGGTGGCCCTATCTATTTACGACCCCAATGACGCACTCGATAGAGAGGTCGTTATAAGGAGGTTTATTTTAGATAGTTTTTTTGGATATACATATAG ACATAAATTTTTGATGGTTAAAGTTCTTGAAGAAGCTTTGAGTTCGCCATGTTTTGATTTTTCAAAATTATTTGAAGATGACTATGACTCGAATACATGT GTTGCGTGGGATGAAACGATGGTAGACGATCCGCGTGGCTTTTTTGAAGATATATATAGATTGGCAGTTGAGCAGTGGCATGAAGAACTAAAAAAAGCAC GTGCGGAGAATCAGTCGTCTTGGTAGGTCGAGGGTAAGCCCGCTCCCACAGGGGATTGTGTTTGCTGGGGAGTCAGCGTTGGCCGATCAGTTGCGGTTGA
Amino Acid Sequence
>type IV secretion protein Rhs
MDAVSRIEQELDSFPDTLDLYRQQLEHWLSRAADQVSHAADLPSLMGMERIIRFGDRVTAVSTGDSEFSSSVVQCPKSGVLAIESKFESVYDIPLGDIVV DVVAVDDGKTSPVALDAQGRGTFTGTPGKFYRVQVHSEVTPEQIKALFKSYDGLTGELDGWLRSEWQGFKPQWSQSVATAASNGMLAGSWAAIEGVWDSI GMLSDILKDPGAFAERLGSGAADLIRLAESAPDVMQKLQLLVSDEAALCLLLRAASLWFEMLPPSQIAGKTAETASMMIVQVLIDVLIGVVLTFVGAGAG IAYLTLRLADRAAQLLSVVKRLVKAIFGIVNTFIHYVDQYKTVAARGIAAGVKKGRMQLRWNAKRNAALKKNEHHDNAPDQAKNPNGDSADCAPLTCTNG CPVSMVTGEELLTLSDGTLDGLLPFEFTRLYRTSAVEIDVGLGFGWSHSLAHRLEFDGDVVVWVDHENRRTRFPLPSVERPQIHNSLSRAAIFLGNEPEE LILALAGETARFYHFRAGRLTAVSDAYGNRLTVQRDYSDRVQRLDNGAGRSLFLRYDQARLVAVDYQVLGGDGWRTEQTLVSYCYDARQRLLAATNAVGD SERYDYDDQHVILQRQLTGGASFFWEWERAGKAARCVRHWASFSQMDTRYVWDDDGRVAVHYVDGTEEVYVHDDSARLVRKVEADGGEHLKAYDDQGRLI AEQDALGAVTEYRYDDVGRLIALLPPEDEPTSYEYRNGFLHSRSRGEAVWTFRRNAEGDVTEAVDPDGQVTHYYYNVRGQLLSIRYPDTSRHIFVWNDLG QLIEETLPAGGVRRFSYDALGRRTTSCDEHGAISRQQWDAAGRLVQTTFPTGATRAYSYGAYGQVTAERDELGRITRYEYDDDLHLVSRKINPDGTRVQY RYDHAQLLLTEIENESGEKYRLDYTPSGLIRQETGFDGRRTAYAYDRNGHLLEKTEFGDDGSTLVTAYQRDAAGRLLLKTLPDGVQVAYRYDRLGRLIGV DDGQKHPLAFAYDLQDRLITEHQGWGTLRYAYDACGQLKRQRLPDNSKLDYHYAKGGALTAIDLNGARLTSHVYQCGREQQRQQGLLLSDYAYDDQGRLL AHVVGHQHTSLYRRDYAYSANGNLEHIADSRHGQRTYAYDALDRLIRVRHSRDELPESFTHDPAGNLLMQDRPGPTRIKGNRLLMQGDRHYDYDAFGNLI RERRGRDQQLVTEYRYDCQHRLISLTRPDGQTATYQYDAFGRRIRKTVDGVSTEFFWQGDHLVAESSKTHHRSYVYEPGTFRPLALLDGKGPKLACPFYY QLDHLGTPQELTDYSGEIVWSAQYDAYGKVAAITLAGEDYLDQPLRFQGQYFDAESGLHYNRHRYYDPRLGRYLTPDPIKLAGGLNQYRYVPNPTGWVDP LGLSSNCPPPNRPGCAVPDGVGGSAVDEGEPQLPRMTAQEQRAKIDELAEANAKRRVNEYESSYQMHTVAKHNPEIPDHALKQRSIDGSHPTISGARERV NSSSQFKSWRLQLHAINDAVSRMNRTPPAPTGFTSQGDPVVRKEMPNGGRGYKPNRRDQQNPRYVDELNYSEVRFRRQNINSPYTAFPD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site