Pseudomonas fluorescens R124, I1A_001649
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1012 | 1049 | 3.2E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 1216 | 1246 | 1.0E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 971 | 1004 | 2.2E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 945 | 985 | 6.4E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1216 | 1249 | 4.8E-7 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1299 | 1331 | 1.1E-16 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 755 | 790 | 6.6E-6 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 1193 | 1232 | 3.2E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 817 | 856 | 3.0E-5 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1528 | 1563 | - |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 625 | 928 | 1.6E-40 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 693 | 722 | 5.2E-6 |
| PANTHER | PTHR32305 | - | - | - | 1299 | 1405 | 2.0E-36 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 995 | 1402 | 4.8E-88 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 796 | 825 | 5.3E-7 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | - | - | 623 | 865 | 1.44E-6 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 838 | 874 | 9.6E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 859 | 888 | 0.0022 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 775 | 815 | 2.6E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 693 | 723 | 1.4E-6 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 400 | 473 | 1.1E-17 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1324 | 1403 | 1.3E-27 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 971 | 1002 | 1.3E-5 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.