Pseudomonas stutzeri NF13, B381_21756 (rplF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas stutzeri NF13
GCF_000341615.1|latest |
| Locus Tag |
B381_21756
|
| NCBI Locus Tag | B381_RS21560 |
| Name |
rplF
|
| Replicon | contig00115 |
| Genomic location | 34100 - 34633 (- strand) |
Cross-References
| RefSeq | WP_003304063.1 |
| GI | 489397582 |
| NCBI Locus Tag | B381_RS21560 |
| NCBI Old Locus Tag | B381_21756 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
50S ribosomal protein L6
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 10.47 |
| Kyte-Doolittle Hydrophobicity Value | -0.407 |
| Molecular Weight (kDa) | 19.2 |
| Isoelectric Point (pI) | 10.57 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 91.5 |
| 7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 91.5 |
| 6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 91.3 |
| 6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 91.3 |
| 7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 91.5 |
| 7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 91.5 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001462 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: B381_21756
Search term: rplF
Search term: 50S ribosomal protein L6
|
Human Homologs
References
No references are associated with this feature.